| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03566 |
|---|
| Symbol | |
|---|
| ID | 6778166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3846067 |
|---|
| End bp | 3847752 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642757014 |
|---|
| Product | Carbon starvation regulatory protein |
|---|
| Protein accession | YP_002127852 |
|---|
| Protein GI | 196158363 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCTA TTGCCATTGT AATACTGGGC ATCATTGGAA TGATGTTTGG TTGGTTCGTC
TATTCGAAAT TCATAGCGAA CCGTATATTC AAGCTGGATG ATAGTTTTGT AACACCTGCC
CACACAATGC AAGATGGGGT GGACTTTGTG CCCACTAACA AAGTGGTGCT GTGGGGGCAC
CATTTCACTT CTGTTGCTGG AGCGGCCCCC ATTGTTGGGC CTGCCATCGC CGTTTATTGG
GGCTGGGTTC CCGCAGTGCT TTGGGTGGTC TTCGGTACTA TCTTGTTCGC GGGTGTTCAC
GATATGGGCG CCTTATGGGC AAGTGCCCGG CACAAAGGAA AGTCCATGGG GGCGCTGTCT
GAAAGTGTCA TAGGAAAACG CTCTCGGGCA CTGTTTATGA TAGTGATTTT CCTTGTTCTT
TTAATGGTAA ATGCCGTTTT CGGTGTTGTT ATTGCTAACT CTTTTGTTTC CCAACCAAAC
GCGGTGTTTC CAGCTTGGAC CGCAATTGTT GTAGCACTCA TTATAGGTCA GTTACTTAAG
CGTAACTTCA GCCTCATTCC ACTGTGTATT GTGGGAATCT TTGTTTTATA CGCTTCTGTG
TATGCAGGGA GTTATATTCC ACTCAGCTTG CCGGAAACCA TGTTTGGCTT AGCCGATAAA
GCAAACTGGA TAATTATTCT CTTTGTTTAT GCGGCCATTG CATCTTTGCT TCCTGTTTGG
ATGCTACTGC AGCCTCGTGA TTTCATTAAC GGTATGCAAT TGCTTGTTGG CTTATTCTTA
CTTTACGGCG CCGTATTTTT TGCTATGCCG GATATCACGG CCCCTGCGTT TAACATGCAA
ACTGCAGTTG ACTCACCAAG TATTATTCCC TTGTTGTTCG TTACCATTGC CTGTGGTGCT
GTGTCTGGCT TCCACGGCAT AGTGTCATCA GGTACCAGCT CGAAGCAGCT TGATAAAGAA
ACAGACGCAC GTTTTGTCGG GTATTTAGGC GCAGTAGGCG AAGGCTCACT TGCGCTTATT
ACTATTGTTG CGGTAAGTGG CGTCGCCTTT GCTGCTTCAC CAGAAGAGTG GCATGAAGTA
TACAGTCACT TAGGCGCTGG CAGCGTTGGC GCGTTTATCA CAGGTGGCGC GAACCTTATA
CAGCAAGGCT GGGGGCTACC GGTAGATTTC TCTTCAACGA TACTTGCGGT AATGGTCGTG
CTATTTGCCG GTACCACCAT GGACTCTGGT GTACGTCTTC AGCGTTACAT TATACAAGAG
TGGGGCGATA TCTACTCAAT CAAAGCGCTT AGAAACGGTG TGGTAGCAAC GCTACTTGCA
GTGGGATGCT GTTTGTTACT CGCATTTGGT GCAGGCGGTG CTTCAGGAAG CGGCGGTATG
ATCATCTGGC CTCTTTTCGG TTCGACCAAC CAGATTCTAG CTAGTCTTAC CCTATTGGTT
ATATCAGTGA TGTTGATTAA GTTAGGACGT CCTGCAAGGT ATACGCTTAT ACCCATGGTA
TTTGTGTTGA TCATGGCTTT CTTCGCTGGA CTGATAAAGC TTAAAGAGTA CTACGTAGAA
GGTAACTACT TGTTGGTGTT CTTAGACGCA GTTGTGCTCG TTGTCTCAGT ACTTGTAATG
CTAGAAGCGT TCTCTGTAGT CTCTAAGCTT AAAAAGGAGT CGCAGAACAA GGCCACACAA
GAATAA
|
|---|
| Protein sequence | MQSIAIVILG IIGMMFGWFV YSKFIANRIF KLDDSFVTPA HTMQDGVDFV PTNKVVLWGH
HFTSVAGAAP IVGPAIAVYW GWVPAVLWVV FGTILFAGVH DMGALWASAR HKGKSMGALS
ESVIGKRSRA LFMIVIFLVL LMVNAVFGVV IANSFVSQPN AVFPAWTAIV VALIIGQLLK
RNFSLIPLCI VGIFVLYASV YAGSYIPLSL PETMFGLADK ANWIIILFVY AAIASLLPVW
MLLQPRDFIN GMQLLVGLFL LYGAVFFAMP DITAPAFNMQ TAVDSPSIIP LLFVTIACGA
VSGFHGIVSS GTSSKQLDKE TDARFVGYLG AVGEGSLALI TIVAVSGVAF AASPEEWHEV
YSHLGAGSVG AFITGGANLI QQGWGLPVDF SSTILAVMVV LFAGTTMDSG VRLQRYIIQE
WGDIYSIKAL RNGVVATLLA VGCCLLLAFG AGGASGSGGM IIWPLFGSTN QILASLTLLV
ISVMLIKLGR PARYTLIPMV FVLIMAFFAG LIKLKEYYVE GNYLLVFLDA VVLVVSVLVM
LEAFSVVSKL KKESQNKATQ E
|
|---|
| |