| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03373 |
|---|
| Symbol | |
|---|
| ID | 6777253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3630120 |
|---|
| End bp | 3631349 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642756821 |
|---|
| Product | putative AcnD-accessory protein PrpF |
|---|
| Protein accession | YP_002127659 |
|---|
| Protein GI | 196158170 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2828] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR02334] probable AcnD-accessory protein PrpF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCAAA TCGCAACCAA CTTCCGCTCA CCACAACAAG GAAAAAACAT GACAAAGTAT
GCGCCACAAC TTCGAGTACC GGCTACCTAC ATGCGTGGCG GTACTAGCAA GGGTGTGTTT
TTTAATTTAT CCGACTTACC AGAGGCAGCA CAAAAACCGG GACCAGCCCG TGATGCGCTG
CTTCTTCGGG TGATAGGTAG CCCAGACCCG TACGGTAAAC AAACCGACGG TATGGGCGGT
GCTACCTCTA GCACCAGTAA AACCGTGATT TTAAGTAAAA GCGAGCGTGA AGGTTACGAT
GTAGACTACT TGTTTGGCCA AGTTGCCATC GACAAGCCTT TCGTAGATTG GAGCGGTAAC
TGCGGTAACC TAACCGCGGC CGTTGGCGCT TTTGCCATTA GCAATGGATT GGTTGATGCC
AGCAAAATTC CACAAAACGG TGTTGCTACG GTAAATATTT GGCAGGCCAA TATCAACAAA
GCGATTATTG CTAACGTGCC AATTACTGAT GGTGAAGTAC AGGAAACTGG CGATTTTGAG
CTTGATGGTG TGACCTTTCC TGCTGCAGAA GTCGAGGTCG CATTTGTGGA CCCTGCCGAT
GGCGAGGGCG CGATATTCCC AACTGGACGT TTAGTCGACA CCTTGGAAGT GCCGGGCGTT
GGTAGCTTGC AGGCCACCAT GATCAACGCA GGTATCCCTA CTATTTTTAT CAACGCTGAA
GATATCGGTT ACACAGGAAC CGAACTTCAA GATGATATAA ATAGTGATGC CGAAGCACTT
GGGAAATTTG AAGCTATTCG TGCACATGGC GCTGTGCAAA TGGGTTTGAT AAAAGATATT
GGCGAAGCTG CAACGCGCCA ACATACTCCT AAAGTGGCTT TTGTAGCAAC GCCTAAAGGC
TACAAAGCGT CTAGCGGCAA AGACATATTG GGCTCTGATA TTGATGTACT CGTTCGCGCC
CTGTCTATGG GTAAACTGCA CCATGCGATG ATGGGCACGG CAGCCGTTGC TATAGCTGCA
GCAGCCGCTA TTCCCGGCAC GCTGGTTAAT CTAGCGGCAG GTGGGGAGAA CAGAGAGTCG
GTTACCTTTG GCCATCCCTC TGGTACTTTA CGGGTTGGCG CGAAAGCGAC TTTTGATAAT
AACCAATGGC ATATTCAACA AGCTGTCATG AGCCGAAGTG CACGAGTTTT AATGGAAGGC
TTTGTTCGCG TCCCCGTTGA GCAAAGTTAA
|
|---|
| Protein sequence | MFQIATNFRS PQQGKNMTKY APQLRVPATY MRGGTSKGVF FNLSDLPEAA QKPGPARDAL
LLRVIGSPDP YGKQTDGMGG ATSSTSKTVI LSKSEREGYD VDYLFGQVAI DKPFVDWSGN
CGNLTAAVGA FAISNGLVDA SKIPQNGVAT VNIWQANINK AIIANVPITD GEVQETGDFE
LDGVTFPAAE VEVAFVDPAD GEGAIFPTGR LVDTLEVPGV GSLQATMINA GIPTIFINAE
DIGYTGTELQ DDINSDAEAL GKFEAIRAHG AVQMGLIKDI GEAATRQHTP KVAFVATPKG
YKASSGKDIL GSDIDVLVRA LSMGKLHHAM MGTAAVAIAA AAAIPGTLVN LAAGGENRES
VTFGHPSGTL RVGAKATFDN NQWHIQQAVM SRSARVLMEG FVRVPVEQS
|
|---|
| |