Gene MADE_03293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_03293 
Symbol 
ID6777083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp3556869 
End bp3557495 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content47% 
IMG OID642756741 
ProductTranscription regulator 
Protein accessionYP_002127579 
Protein GI196158090 
COG category[K] Transcription 
COG ID[COG1678] Putative transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.856515 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGTAC AAAATGCAGC CGCTATTAAT TGGCAGCGAA AGACAAATGA AAGAAGATTT 
ATGACGGAAT TGAAAAGCTT ACAAAACCAC TTTTTAGTCG CGATGCCCAG TTTGGACGAT 
CCGTACTTTT CTCGTTCACT TATTTATGTA TGCGAGCACA ACGCAGAAGG CGCAATGGGC 
ATAGTGGTAA ACCAACCTTC TACGATGAAC GTTAAGCAGC TTTTAGAGCA AACAGACAAA 
GCGCTTATGG TATCTGATGA TAAAGCTGAG CAAATAGTGT TAGCCGGCGG CCCGGTAAAC 
CAAGAGCGAG GGTTTGTGCT TCATTCATCC CAAAAAGAAT GGGCATCTAG CCTTAAGCTT 
GCGCCTGGGG TCATGGTGAC TACGTCGAAG GACATACTTA CCGCTATTGC CAATGACGAA 
GGCCCAGATG ATGTTTTAAT TGCCCTTGGG TACGCAGGGT GGACAGCCGG TCAGCTAGAA 
AAGGAAATGC AGGAGAACGC ATGGCTCACC ATCGAGGCCG ATGAAGAAAT CCTCTTTAAT 
ACGCCTATGC ACAAAAAATG GCAGGCCACT GTGAATAAAC TCGGTGTGGA TGTTTGGCAG 
CTAGCACCAG GAGCCGGTCA TGCCTGA
 
Protein sequence
MSVQNAAAIN WQRKTNERRF MTELKSLQNH FLVAMPSLDD PYFSRSLIYV CEHNAEGAMG 
IVVNQPSTMN VKQLLEQTDK ALMVSDDKAE QIVLAGGPVN QERGFVLHSS QKEWASSLKL 
APGVMVTTSK DILTAIANDE GPDDVLIALG YAGWTAGQLE KEMQENAWLT IEADEEILFN 
TPMHKKWQAT VNKLGVDVWQ LAPGAGHA