| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03284 |
|---|
| Symbol | |
|---|
| ID | 6778539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3544288 |
|---|
| End bp | 3545649 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642756732 |
|---|
| Product | sigma-54 dependent DNA-binding response regulator, Fis family protein |
|---|
| Protein accession | YP_002127570 |
|---|
| Protein GI | 196158081 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR02915] putative PEP-CTERM system response regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATA CCATTTTGGT AGTAGACGAT GATTTAGGTA TTCAAAAGCA GCTTAAATGG
AGCCTTACCG ATTACAATGT TGTTTTTGCT GATGATCATA CGTCTGCCAT AGCCCAGCTA
CGTCGTTTTG AACCTAAAGT TGTCACCCTG GATTTGGGGT TGCCACCAGA CCCGGCAAAC
GCGTCTGAAG GGTTGAGAAT TCTTCACGAC ATCATTTCAT TAGCGCCGCG TACCAAAGTT
ATTGTTGTAA CGGGCAATAA CGACAAACAG CATGCGCTTA AAGCGATAGA TTTTGGTGCC
TATGACTTTT ACCAAAAGCC CATAGATTCT GACACTATAA AGCTGTTAGT TCACCGCGCG
CTTAATCTAG CTACGTTAGA GCATGAAAAT AGTATTCTTG CTCGCACCCG CTCGGGAATG
TCTCGCATAG TCGGTAACAG CGAAGCCATT CAGAAAGTCG TACGTCGCGC AGAGAAAATT
GCTAACACTG ACATTAGCAC CCTTTTACTT GGCGAAAGTG GCACAGGTAA AGAGGTATTC
GCGCGCAGTA TTCATGAACA TAGCCCAAGA AGAGACAAGC CATTTGTAGC TATTAACTGT
GCATCTATCC CTGAAAACCT TTTGGAAAGT GAACTGTTTG GTTATGAAAA AGGCGCCTTT
ACGGGGGCTA ATAAAACCAC GCTCGGTAAA ATAGAAACAG CGCAGGGCGG CACCCTGTTT
TTAGACGAAA TTGGGGATAT GCCCATTGGC CTTCAGGCTA AAATGCTTCG CTTTTTACAA
GAGCGGGTTA TAGAACGGGT TGGGGGGCGT AACGAAATAC CCGTGGATAT TCGGGTAATC
TGTGCTACTC ACCGGGATTT ACAAAAAATG GTGGCAGAGG AAACCTTCAG GGAAGATTTA
TATTATCGGG TAGGGGAAAT GCCGATCCTG ATCCCACCGC TTCGTGAACG TGACCAAGAT
ATTATTCTCT TAGCTCGGAC CTTTCTCAAT ATTTACAGAG AAGAGTTTAA AGCAAAGGCA
AAGAGCTTCT CTGAGTCTGC AGTGAACGCT ATGCTGGGAC ACAAATGGCC TGGCAATATT
CGCGAGATGC AAAACAAATT AAAATCAGCG GTAATTATGG CTGAAGGAAC CGTTATTCAG
CCTGACGACT TAGGCTTAAT GCCGGTTGAT GCTCAAAATG AGCCTGAAAC TCTTAATCTG
CGTGAAGTTA GAGAGATTGC CGAAAGTCGC GCTATTCGCA AAGCCTATCA AAAAGCGGAA
AAAAACATGT CGAAAACCGC CGAATTACTT GGTGTAACCC GGCCAACACT TTATTCGCTG
ATCGACAAAT ACCACATGGA AGACATTAAA AGCAGCGACT AA
|
|---|
| Protein sequence | MTDTILVVDD DLGIQKQLKW SLTDYNVVFA DDHTSAIAQL RRFEPKVVTL DLGLPPDPAN
ASEGLRILHD IISLAPRTKV IVVTGNNDKQ HALKAIDFGA YDFYQKPIDS DTIKLLVHRA
LNLATLEHEN SILARTRSGM SRIVGNSEAI QKVVRRAEKI ANTDISTLLL GESGTGKEVF
ARSIHEHSPR RDKPFVAINC ASIPENLLES ELFGYEKGAF TGANKTTLGK IETAQGGTLF
LDEIGDMPIG LQAKMLRFLQ ERVIERVGGR NEIPVDIRVI CATHRDLQKM VAEETFREDL
YYRVGEMPIL IPPLRERDQD IILLARTFLN IYREEFKAKA KSFSESAVNA MLGHKWPGNI
REMQNKLKSA VIMAEGTVIQ PDDLGLMPVD AQNEPETLNL REVREIAESR AIRKAYQKAE
KNMSKTAELL GVTRPTLYSL IDKYHMEDIK SSD
|
|---|
| |