Gene MADE_03195 details

Gene Information

• Locus tag: MADE_03195
• ID: 6776982
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 3455413
• End bp: 3455856
• Gene Length: 444 bp
• Protein Length: 147 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 642756645
• Product: nitrogen regulatory IIA protein
• Protein accession: YP_002127483
• Protein GI: 196157994
• COG category: [G] Carbohydrate transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
• TIGRFAM ID: [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATATAC AAGCCATCGT AAGTCTGGAC CGCACCGAGT GTGCGGTTCA GTGTAATAGT 
AAAAAGCGAA TTCTTGAGAT CATCGCAGAT ATCGCTGCCA AAAATAACGA TAACATCGAT 
CAGGCAACGG TACTTAATAG TTTGATGTCT CGAGAGCGTA TGGGTAGTAC CGGAATCGGC 
AATGGCATTG CGTTACCACA TGGGCGCTTG CCAGGTTTAG AAAAGGTGAT CGCCATTGTT 
GTCACCAGTA CGCCAGCCAT TAATTTTGAC GCGCTCGATG AAAAGCCGGT AGATATATTT 
TTCGCGTTAC TTGTTCCTGA AGAGCAAACC GAAGGCCATC TACAAACATT AGCCACGGTA 
GCCGGTAAAC TAAGCGATAA AGAAACGATT AAAGCGATAC GTCGTGCCAG TACAAGCGAT 
GATATTCTTT CTGCACTAAG TTAA 

 

Protein sequence

MDIQAIVSLD RTECAVQCNS KKRILEIIAD IAAKNNDNID QATVLNSLMS RERMGSTGIG 
NGIALPHGRL PGLEKVIAIV VTSTPAINFD ALDEKPVDIF FALLVPEEQT EGHLQTLATV 
AGKLSDKETI KAIRRASTSD DILSALS