Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03193 |
Symbol | |
ID | 6778238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 3453600 |
End bp | 3455081 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642756643 |
Product | RNA polymerase sigma-54 factor |
Protein accession | YP_002127481 |
Protein GI | 196157992 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCAT CTTTACAGCT AAAATTTAGC CAACAACTTA CCATGACACC CCAGCTTCAG CAGGCGATAA AACTGCTGCA GCTATCTACG CTTGATCTTC AGCAGGAGAT TCAAGAAGCC CTCGATTCAA ACCCTTTATT GGAAGTTGAA GAAGGTAACG ACGAGCCGCA AGTAGAAAAA AATAATATCG ATAGCGACGA TAGCGTGACA GAAGCGTCTG CGACAGCGTC TAGCGATACA TTGGAAGCGG GTGACGCGTT AGAAAAAAAC GACCTTCCCG ATGAATTTCC TATCGACAGC ACATGGGATG AATACTATTC AGCGTCATCG GCCCCAGCGC CAGGTCCTTC AAATGACGAT GAACAAATAT TTCAAGGCGA AACCACCGAG GATATTCAGG AACATTTGTC GTGGCAGATG CGATTGACCC ATTTCTCAGA TACCGACCGC GCCATTGCTA CGGCAATTAT CGACTCTATT GACGAGTCTG GCTATTTAAC CGTGACCCTT GAAGACATTC TTGACGCGGT AAACTCTGAG GATATGGAAG AGCCTATAGA AATGGACGAA ATAGAATGCG TACTTAAGCG TATTCAGATG TTCGACCCCA TTGGTTCGGG CTCCCGCTCG CCGCAGGAAT GTCTAATGGT GCAACTGCGC CAGTTCTCAG AAGACACACC ATGGCTTAAC GAAGCCAAAC AGCTTATAGA AGAATATTCA GACCTATTAA GCAGTAAAGA TTATCGCACG TTAATGCGTA AGAGCCGCTT GAAGGAAGAT CAGCTGCGCG AGGCAATGCG TTTATTACAA ACCTTGAATC CTCGCCCAGG TAGTGCTTTA GTTACTAAAG AGCCTGAGTA CGTTATTCCT GATGTCTCGG TCGCCAAAAA GAATGGCCGT TGGGTGGTTG AGCTAAACCC CGACAGCCTG CCTAAGTTGA GTGTAAATCA ACAATACGCT GCAATGAGTC GTCGTGCCAA AAATAGTAGC GACTCACAAT TCATCCGCTC ACACATGCAA GAGGCTAAGT GGTTCATTAA GAGCCTTGAA TCTCGCAACG AAACCTTAAT GAAGGTGGCA AACTGTATTG TGCAGCAGCA GATGGGCTTT TTTGAACATG GCCCGGAAAT GATGAAACCT ATGGTGCTTA ACGATGTCGC AGAAATGGTA GATATGCACG AATCAACGAT TTCACGCGTC ACAACGCAAA AGTATATGCA TACACCACGT GGTATCTTCG AATTGAAGTA CTTCTTCTCT AGCCACGTAG CAACAGACTC TGGTGGTGAG TGTTCATCTA CCGCGATTCG TGCATTGATC AAAAAGCTAG TGGCGGCTGA AAAGCCGAGC AAGCCACTAA GTGATAGCAA GATTGCTTCA TTGTTGGCCG AACAAGGCAT TAAAGTTGCC CGGCGAACAA TAGCAAAATA CCGGGAATCA TTGTCGATCC CGCCGTCGAA CCAACGCAAG AGCCTAATTT AA
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Protein sequence | MKPSLQLKFS QQLTMTPQLQ QAIKLLQLST LDLQQEIQEA LDSNPLLEVE EGNDEPQVEK NNIDSDDSVT EASATASSDT LEAGDALEKN DLPDEFPIDS TWDEYYSASS APAPGPSNDD EQIFQGETTE DIQEHLSWQM RLTHFSDTDR AIATAIIDSI DESGYLTVTL EDILDAVNSE DMEEPIEMDE IECVLKRIQM FDPIGSGSRS PQECLMVQLR QFSEDTPWLN EAKQLIEEYS DLLSSKDYRT LMRKSRLKED QLREAMRLLQ TLNPRPGSAL VTKEPEYVIP DVSVAKKNGR WVVELNPDSL PKLSVNQQYA AMSRRAKNSS DSQFIRSHMQ EAKWFIKSLE SRNETLMKVA NCIVQQQMGF FEHGPEMMKP MVLNDVAEMV DMHESTISRV TTQKYMHTPR GIFELKYFFS SHVATDSGGE CSSTAIRALI KKLVAAEKPS KPLSDSKIAS LLAEQGIKVA RRTIAKYRES LSIPPSNQRK SLI
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