| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03193 |
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| Symbol | |
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| ID | 6778238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 3453600 |
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| End bp | 3455081 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642756643 |
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| Product | RNA polymerase sigma-54 factor |
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| Protein accession | YP_002127481 |
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| Protein GI | 196157992 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCAT CTTTACAGCT AAAATTTAGC CAACAACTTA CCATGACACC CCAGCTTCAG
CAGGCGATAA AACTGCTGCA GCTATCTACG CTTGATCTTC AGCAGGAGAT TCAAGAAGCC
CTCGATTCAA ACCCTTTATT GGAAGTTGAA GAAGGTAACG ACGAGCCGCA AGTAGAAAAA
AATAATATCG ATAGCGACGA TAGCGTGACA GAAGCGTCTG CGACAGCGTC TAGCGATACA
TTGGAAGCGG GTGACGCGTT AGAAAAAAAC GACCTTCCCG ATGAATTTCC TATCGACAGC
ACATGGGATG AATACTATTC AGCGTCATCG GCCCCAGCGC CAGGTCCTTC AAATGACGAT
GAACAAATAT TTCAAGGCGA AACCACCGAG GATATTCAGG AACATTTGTC GTGGCAGATG
CGATTGACCC ATTTCTCAGA TACCGACCGC GCCATTGCTA CGGCAATTAT CGACTCTATT
GACGAGTCTG GCTATTTAAC CGTGACCCTT GAAGACATTC TTGACGCGGT AAACTCTGAG
GATATGGAAG AGCCTATAGA AATGGACGAA ATAGAATGCG TACTTAAGCG TATTCAGATG
TTCGACCCCA TTGGTTCGGG CTCCCGCTCG CCGCAGGAAT GTCTAATGGT GCAACTGCGC
CAGTTCTCAG AAGACACACC ATGGCTTAAC GAAGCCAAAC AGCTTATAGA AGAATATTCA
GACCTATTAA GCAGTAAAGA TTATCGCACG TTAATGCGTA AGAGCCGCTT GAAGGAAGAT
CAGCTGCGCG AGGCAATGCG TTTATTACAA ACCTTGAATC CTCGCCCAGG TAGTGCTTTA
GTTACTAAAG AGCCTGAGTA CGTTATTCCT GATGTCTCGG TCGCCAAAAA GAATGGCCGT
TGGGTGGTTG AGCTAAACCC CGACAGCCTG CCTAAGTTGA GTGTAAATCA ACAATACGCT
GCAATGAGTC GTCGTGCCAA AAATAGTAGC GACTCACAAT TCATCCGCTC ACACATGCAA
GAGGCTAAGT GGTTCATTAA GAGCCTTGAA TCTCGCAACG AAACCTTAAT GAAGGTGGCA
AACTGTATTG TGCAGCAGCA GATGGGCTTT TTTGAACATG GCCCGGAAAT GATGAAACCT
ATGGTGCTTA ACGATGTCGC AGAAATGGTA GATATGCACG AATCAACGAT TTCACGCGTC
ACAACGCAAA AGTATATGCA TACACCACGT GGTATCTTCG AATTGAAGTA CTTCTTCTCT
AGCCACGTAG CAACAGACTC TGGTGGTGAG TGTTCATCTA CCGCGATTCG TGCATTGATC
AAAAAGCTAG TGGCGGCTGA AAAGCCGAGC AAGCCACTAA GTGATAGCAA GATTGCTTCA
TTGTTGGCCG AACAAGGCAT TAAAGTTGCC CGGCGAACAA TAGCAAAATA CCGGGAATCA
TTGTCGATCC CGCCGTCGAA CCAACGCAAG AGCCTAATTT AA
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| Protein sequence | MKPSLQLKFS QQLTMTPQLQ QAIKLLQLST LDLQQEIQEA LDSNPLLEVE EGNDEPQVEK
NNIDSDDSVT EASATASSDT LEAGDALEKN DLPDEFPIDS TWDEYYSASS APAPGPSNDD
EQIFQGETTE DIQEHLSWQM RLTHFSDTDR AIATAIIDSI DESGYLTVTL EDILDAVNSE
DMEEPIEMDE IECVLKRIQM FDPIGSGSRS PQECLMVQLR QFSEDTPWLN EAKQLIEEYS
DLLSSKDYRT LMRKSRLKED QLREAMRLLQ TLNPRPGSAL VTKEPEYVIP DVSVAKKNGR
WVVELNPDSL PKLSVNQQYA AMSRRAKNSS DSQFIRSHMQ EAKWFIKSLE SRNETLMKVA
NCIVQQQMGF FEHGPEMMKP MVLNDVAEMV DMHESTISRV TTQKYMHTPR GIFELKYFFS
SHVATDSGGE CSSTAIRALI KKLVAAEKPS KPLSDSKIAS LLAEQGIKVA RRTIAKYRES
LSIPPSNQRK SLI
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