| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03050 |
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| Symbol | |
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| ID | 6776750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 3300758 |
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| End bp | 3301765 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642756499 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_002127338 |
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| Protein GI | 196157849 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase
[TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0609305 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCAGC AACGTATTAC AGTCATCCGC GGTGACGGCA TTGGCCCGGA CATTATCGAT
GCAACCACAA AAATTCTAGA TAAGGTTGGC TGTGACTTTG CCTATGACTA TGCCGACGCT
GGTTTAGTCG CACTGGAAGA ACATGGCGAG CTTCTACCTC AAGAGACACT AGACCTAATC
GCAAAAAACA AAGTTGCGCT TAAAGGCCCG TTGACTACGC CTGTTGGTGA AGGTTTTACC
TCAATCAATG TTAGTCTTCG CAAACAGTTC AAACTGTACG CAAACCTTCG CCCTGTAATG
TCTTTTAAAG GCACAAAAGC ACGCTACGAA GACATTGATA TCATCACCGT TCGTGAAAAC
ACGCAAGGTA TGTACTCTGG CTTAGGTCAA GTGGTATCAG AAGACGGTAA CGAAGCTGAA
GCGATGAGTA AAATCACGCG CGACGGCGCT GAAAAAATTG TGACTTTTGC TTACGAACTA
GCCCGTCGTG AAGGCCGCAA GAAAGTGACT GCGGTTCACA AAGCTAACAT TCTTAAGTCA
ACCTCAGGCC TATTCCTTAA AGTTGCCCGC GAAGTTGGCG AGCGTTACCC AGATATCGAA
TCGGCTGAAA TGATTGTTGA TAACTGCTGT ATGCAGCTTG TTATGAACCC GCACCAGTTC
GACGTTATCG TAACGACTAA CCTTTTCGGT GACATCCTAT CTGATCTATG TGCTGGTCTT
GTAGGTGGTC TTGGTATGGC CCCTGGAGCA AACATTGGTG AAGACTGCGC TATTTTTGAA
GCAGTGCATG GCTCAGCCCC CGATATTGCA GGCAAAAACC TAGCTAACCC AACGTCAGTA
GTTCTAGCTG CAGCGCAAAT GCTTGAATAC CTGAACATGG GTGACAAAGC AGAGAAGATC
CGTGCAGCTC TTAAAGACGT TATTGAATCA GGCGACCGTA CGACTCGCGA CTTGGGTGGC
GAAGCTGGTA CCACTGAATT CACACAGGCA CTTCTAGACC GCCTATAA
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| Protein sequence | MTQQRITVIR GDGIGPDIID ATTKILDKVG CDFAYDYADA GLVALEEHGE LLPQETLDLI
AKNKVALKGP LTTPVGEGFT SINVSLRKQF KLYANLRPVM SFKGTKARYE DIDIITVREN
TQGMYSGLGQ VVSEDGNEAE AMSKITRDGA EKIVTFAYEL ARREGRKKVT AVHKANILKS
TSGLFLKVAR EVGERYPDIE SAEMIVDNCC MQLVMNPHQF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGEDCAIFE AVHGSAPDIA GKNLANPTSV VLAAAQMLEY LNMGDKAEKI
RAALKDVIES GDRTTRDLGG EAGTTEFTQA LLDRL
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