Gene MADE_03046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_03046 
Symbol 
ID6777652 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp3295405 
End bp3296961 
Gene Length1557 bp 
Protein Length518 aa 
Translation table11 
GC content43% 
IMG OID642756495 
ProductGGDEF domain protein 
Protein accessionYP_002127334 
Protein GI196157845 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.444384 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCAA AACAATTACA AACCCTAAAG CAAAACAACA CGCTTCTTTG TCAGTTTATT 
GTAAAGCTCT CTGCGTTTTA TGAAGGCTTC TCGGACAAAA TAGATACCGA GCTAAAGGTG
TTGCGAGGGC ATCTTTCTGG CACCCCTAAC TTTAGCCTTG CTACTGTTAG TATTGAAAAG
CTAAACAAGT CGCTCCAGCA TCAGGAAATC ACCCTGCGCA AATACAGTGT TGATACGGTT
TCATCTCTTG AAGATGCCAT GAAACAACTG CAAAAAATTG TATTTGAAGA CAGTGAATTA
AAAGGCTTGA CCACGCAAGA GCTGATCAAA CTGAATCAGC CTATTGGCGA TATATTCAGT
ATCTATAAAC TCTATGCCAA AGCCATAGCG CTACACCGTA TTGCGCTAAA CAAAGAAATG
GTTGGACTAT CGCCAATTGA CTCAGGTGAA AATAGCCATA GCGGTAAGGA CGATACAAAA
GCTCACGCAC CGCAAGATGA AAATCCTCAC TATCGTTCAA TATTGGTTGA ACTTAACCAC
TTAATCACGT CTTACGCGCA GAAAAAACCT GACGACCATC AGCTGACCGA TATCAAACAG
CGTCTTGATG AGGGCATGGA TAAAGAACAG TTACTTAAAA GTTGTGTCGT AATTTTGCGA
ATGATTGTGC AAGACGCTAT GTCTGAAGCA AGTTTGACAG GCAAAGTAAT TCAAAGCCTT
CACCGCTCAC TTAGCGAAGT AAGTAACGAT GTAAGTAACA CCATAGAAAA TAGTAAGAGT
CAATTTGAGC AAAGGCAGGT GGGTAATGAA CAACTTAAAC GCCATATCAG CCATATCGAA
GAGGCCATGT CGGAAAGCGA GTCTTTTGAG GCATTAAAAG AACAAACGCA GTTTTGCGTT
GAAAAACTCG TCACAGCACT TAGCGAACAA CAAGATAGCG ACGAGCAGGG GCAAGAGGCA
ATAATGGCCC TGCTATCCTC AATGCAATCG AGAATAGATA CCCTGCAGCA GCAAACCAGT
GTTTACAAGA AGAAGCTTGC TGAACAGGCG ATGCAGAGTC GAACCGATCC ACTTACCCGC
CTTCCAAATA GACAGGCCTA TAACGAGAGA CTTGAGACAG CCTATACCCG TTTTAAATCT
AACGGTCATT CGCTGGCGGT TGCCGTAGTC GATATCGATC ACTTCAAATC TATAAACGAT
AGGTTTGGCC ATGCCACTGG GGATAAAACA CTGCAAGTCG TCAGTAAGTT TTTAAAGCAA
AGCCTCTCGG AAAATGATTT TGTTGCCAGA TGGGGCGGAG AAGAGTTTGT CATGCTTTTG
CCTGATGCCG AAATGGCGGA CATAGATAAA AAGCTTAATG AAGTTAGAAC CAAGCTAGCC
GCAATGCCAT TTAAGTTCAA ACAAGAAAAA GTAAAAATTA CCGCCTCTTT TGGCGCTACA
TGCTTTGGTC AGGATGACAC TACAGAGTCT GTCTTCGAGC GCGCCGATGA GTATCTTTAT
AAAGCTAAAC GAAGTGGTCG CAACCTTGTT GTCACCGATT TAAGCACTGA CGTGTAG
 
Protein sequence
MEAKQLQTLK QNNTLLCQFI VKLSAFYEGF SDKIDTELKV LRGHLSGTPN FSLATVSIEK 
LNKSLQHQEI TLRKYSVDTV SSLEDAMKQL QKIVFEDSEL KGLTTQELIK LNQPIGDIFS
IYKLYAKAIA LHRIALNKEM VGLSPIDSGE NSHSGKDDTK AHAPQDENPH YRSILVELNH
LITSYAQKKP DDHQLTDIKQ RLDEGMDKEQ LLKSCVVILR MIVQDAMSEA SLTGKVIQSL
HRSLSEVSND VSNTIENSKS QFEQRQVGNE QLKRHISHIE EAMSESESFE ALKEQTQFCV
EKLVTALSEQ QDSDEQGQEA IMALLSSMQS RIDTLQQQTS VYKKKLAEQA MQSRTDPLTR
LPNRQAYNER LETAYTRFKS NGHSLAVAVV DIDHFKSIND RFGHATGDKT LQVVSKFLKQ
SLSENDFVAR WGGEEFVMLL PDAEMADIDK KLNEVRTKLA AMPFKFKQEK VKITASFGAT
CFGQDDTTES VFERADEYLY KAKRSGRNLV VTDLSTDV