| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03027 |
|---|
| Symbol | ispH |
|---|
| ID | 6777439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3276990 |
|---|
| End bp | 3277934 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642756476 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_002127315 |
|---|
| Protein GI | 196157826 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATAC ATTTAGCTAA CCCTCGTGGT TTCTGTGCGG GCGTAGACAG AGCTATCACT
ATTGTAGAAC GGGCGCTTGA AATGTTTGAG CCGCCCATCT ATGTGCGCCA CGAAGTTGTG
CACAATAAAT TCGTAGTAGA CGGATTACGT GAGCGCGGCG CGCTGTTTGT GGATGAGCTT
CATGAAGTGC CAGACGATAG CATTGTGATT TTCTCTGCCC ACGGCGTGTC GCAAGCGGTT
AGAAAGGAAG CGGAAAATCG CGGCCTTAAG GTGTTTGACG CAACCTGTCC ATTAGTCACA
AAAGTGCATA TGGAAGTAAC CCGCGCTAGT AAAACAGGTA CTGAATGTAT CTTAATTGGT
CACGCCGGTC ACCCCGAAGT AGAGGGGACT ATGGGCCAAT ACAGTAATGA CGAAGGCGGT
ATTTATTTAG TAGAGTCTGA GGCTGATGTG GCAACATTGG AAGTTAAAGA CCCAACGAAC
CTTTATTATT GCAGCCAAAC TACGTTATCT GTTGATGATA CTGCCGATGT TATCGACGCC
CTTCGCGCTA AGTTTCCAAA AATCAATGGC CCGAGAAAAG ATGATATTTG CTATGCCACG
CAGAATCGCC AAGACGCGGT GCGCGATTTA GCGCAAGACT GTCAGGTACT GTTAGTGGTT
GGCGCACAGA ACAGCTCTAA TTCCAACCGC CTTCGAGAGT TAGCGGAAAA AATTGGTGCG
AAGGCTTACT TAATCGCTGA TGCCGACTGT ATACAGCAAG AGTGGCTAGA AGGTATTGAA
CATATTGGCG TTACCGCTGG CGCATCTGCC CCCGAAGTAT TGGTGCAGGG TGTGGTAAAC
AAGCTTAAAG CGTGGGGGGC TGTTTCAGCT TCTGAGCGTT CAGGGCGTGA AGAAAACGTA
GAGTTTGCTG TACCGAAAGA ATTAAGGGTT AAACAAGTAG TCTGA
|
|---|
| Protein sequence | MQIHLANPRG FCAGVDRAIT IVERALEMFE PPIYVRHEVV HNKFVVDGLR ERGALFVDEL
HEVPDDSIVI FSAHGVSQAV RKEAENRGLK VFDATCPLVT KVHMEVTRAS KTGTECILIG
HAGHPEVEGT MGQYSNDEGG IYLVESEADV ATLEVKDPTN LYYCSQTTLS VDDTADVIDA
LRAKFPKING PRKDDICYAT QNRQDAVRDL AQDCQVLLVV GAQNSSNSNR LRELAEKIGA
KAYLIADADC IQQEWLEGIE HIGVTAGASA PEVLVQGVVN KLKAWGAVSA SERSGREENV
EFAVPKELRV KQVV
|
|---|
| |