| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03016 |
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| Symbol | |
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| ID | 6779043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 3266351 |
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| End bp | 3266953 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 642756465 |
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| Product | putative type IV pilus biogenesis protein |
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| Protein accession | YP_002127304 |
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| Protein GI | 196157815 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.155595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGAAAATTA GCGTTCAAAT TATGACAACA CAGAGGCAAA TAAAAAGACC TCACCCAGCA
TTAACCCAAG CAGGACTTAC CCTGCTAGAA ATGCTGGTCG CGGTAGCAGT ACTTGCCATT
ATTCTTACCA CGGTTGCGCC GGGCATTCAG AATATAATCA TCAAAAATAG AATCACTGCT
GACTTGAACA ACTTAAGTGC CGTTGCTCAG CGTGCTAGGT TCACCGCAGT AGACGAACAA
ACCAGCGTGA CCCTTTGTCC AACAACTAAT TACACGGCCT GCACCAATAA TTGGAAAAAT
GCCAAAATGG TATTTGTTGA CGCTAACGGA AATGGCAGCC GAGATAATAG CGAGGCGCTT
ATTATCGCAA GTGACCCACT TAATACTGCA AATGCGGTTT ACGGCATCAC GGGGAGCTTA
GTATTTGACG AACAAGGGGG GATAAATAGA GCGGCGACGA TTACCCTATG TCCTAGCGAT
AACAATGCGG ATTATGCATC TGCTCTTTTA CTTTCCCTTT ATGGAAGAAT TTCAGTGGCT
GTAGATAGCA ACGGAGATGA TATAAAAGAA GACCTTGCTG GTGATGATTT AGCCTGCAGC
TAA
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| Protein sequence | MKISVQIMTT QRQIKRPHPA LTQAGLTLLE MLVAVAVLAI ILTTVAPGIQ NIIIKNRITA
DLNNLSAVAQ RARFTAVDEQ TSVTLCPTTN YTACTNNWKN AKMVFVDANG NGSRDNSEAL
IIASDPLNTA NAVYGITGSL VFDEQGGINR AATITLCPSD NNADYASALL LSLYGRISVA
VDSNGDDIKE DLAGDDLACS
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