| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03007 |
|---|
| Symbol | |
|---|
| ID | 6777537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3259452 |
|---|
| End bp | 3261137 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642756458 |
|---|
| Product | L-aspartate oxidase |
|---|
| Protein accession | YP_002127297 |
|---|
| Protein GI | 196157808 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0029] Aspartate oxidase |
|---|
| TIGRFAM ID | [TIGR00551] L-aspartate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00568671 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTG TATCGTCTTC ACTAACTTCC ACATCAAATG CAATAGAACA CCGTTGTGAC
GTATTGATTA TTGGGAGTGG CGCGGCAGGA TTAAGCTTAG CATTAAAGCT TGCCGACCAT
TGTCAGGTAA TTGTACTTAG TAAGAGTGAC CGCAACGAGG GCTCTACCCG TTATGCGCAA
GGTGGCATTG CGGCGGTATT TGACGAGCAA GACTCAATAG ACGCCCACGT TACCGACACA
TTAGCCGCAG GTGCAGGCCT TTGTGAAGAA CCAGCTGTAC GTTTTACTGC CGAGCGGGCG
AAGTCTTCGC TTGAATGGCT AATTGGCTAC GGCGTGCCAT TTGATACAGA AAAAAGTGAG
TCTGGCGAAG AGCGCTTCCA CCTTACCCGT GAAGGGGGAC ATAGCCACAG ACGTATCCTT
CATGCAGCCG ATGCAACAGG TGAAGCACTT CAAATCACCC TTAATGATGC CGTCTCTACC
CATCCCAATA TTCATGTGTT CGAGCGCTAC AATGCCATTG ACCTTATTCC CTCTAAAGAA
GAGAAGAATA GCATTGTGGG CGCCTATGTA TGGAATAGAC AACAAGAGCA TGTAGAAGTA
ATTCGTGCGC CATTTGTTGC ATTGGCGACG GGTGGCGGGA GCAAAGTATA CCAATATACG
TCAAATCCTG ACGTTTCCAG CGGTGATGGT ATCGCGATGG CGTGGCGTTC GGGTTGTCGC
GTAGCGAATA TGGAATTCAA TCAGTTCCAC CCTACTTGCT TATACCACCC GCAAGCGCGA
AACTTTCTTA TTACCGAAGC GCTGCGCGGC GAAGGCGCAA ATTTGTGTCA TGCAGACGGC
ACACGCTTTA TGCACAAGTT CGACGAGCGA GGTGATTTGG CACCGCGTGA CGTAGTCGCC
CGAGCGATTG ACTATGAAAT GAAGCGACTA GGCGCCGATT GCATGTACTT AGACATCAGT
CACAAACCTG CCGACTTTAT CGTGAAGCAC TTTCCGAATA TCTATCGCAA ATGCCGCTCC
TTAGGTATTG ATATTACGCG GGAACCCATC CCCGTTGTGC CTGCAGCTCA CTATAGCTGC
GGTGGTGTTA TTACTGATTT TAACGCTAAG ACTGATTTAA ACAATGTATA CGCGATTGGT
GAAGTGGCTT ATACAGGTTT GCACGGCGCA AACAGGATGG CGTCGAACTC ATTGCTTGAA
TGTGTAGTAT TTGCTAGCGC TGCCGCTGAA GACATTATAA AAAAATTACC TAGCGCAGAC
TGTGAAGAGT CGATTGCGCC TTGGGACGAA AGCCAGGTAT CTAACTCTGA CGAAGAAGTT
ATCATTCAGC ATAACTGGCA CGAATTGCGT CTTTTTATGT GGGACTATGT GGGTATTGTT
CGTACCGACA AACGGCTTGA ACGGGCGATG CGCCGTATAA AGCTGCTCGA ACAAGAAATT
GCCGAATATT ATGCACACTT TAGAGTGAGC AATAATTTGC TCGAATTACG TAACTTAGTA
ACGGTTGCCG AGCTCATCGT TCGTTGCGCT ATGGCAAGAA AAGAAAGCCG CGGGCTGCAC
TTTAACCTTG ACCACCCTGA GCAGATAAAC AATCCAACGC CTACTATTCT CATTCCGAGA
AAGCAGCTTT CAGGTGCCGA TGTGGGTTCG TTAATTACCC ACGACAGCTT TTGTGATGCT
GACTAG
|
|---|
| Protein sequence | MKSVSSSLTS TSNAIEHRCD VLIIGSGAAG LSLALKLADH CQVIVLSKSD RNEGSTRYAQ
GGIAAVFDEQ DSIDAHVTDT LAAGAGLCEE PAVRFTAERA KSSLEWLIGY GVPFDTEKSE
SGEERFHLTR EGGHSHRRIL HAADATGEAL QITLNDAVST HPNIHVFERY NAIDLIPSKE
EKNSIVGAYV WNRQQEHVEV IRAPFVALAT GGGSKVYQYT SNPDVSSGDG IAMAWRSGCR
VANMEFNQFH PTCLYHPQAR NFLITEALRG EGANLCHADG TRFMHKFDER GDLAPRDVVA
RAIDYEMKRL GADCMYLDIS HKPADFIVKH FPNIYRKCRS LGIDITREPI PVVPAAHYSC
GGVITDFNAK TDLNNVYAIG EVAYTGLHGA NRMASNSLLE CVVFASAAAE DIIKKLPSAD
CEESIAPWDE SQVSNSDEEV IIQHNWHELR LFMWDYVGIV RTDKRLERAM RRIKLLEQEI
AEYYAHFRVS NNLLELRNLV TVAELIVRCA MARKESRGLH FNLDHPEQIN NPTPTILIPR
KQLSGADVGS LITHDSFCDA D
|
|---|
| |