| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02983 |
|---|
| Symbol | |
|---|
| ID | 6778982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3234376 |
|---|
| End bp | 3236805 |
|---|
| Gene Length | 2430 bp |
|---|
| Protein Length | 809 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642756434 |
|---|
| Product | ATP-dependent protease La |
|---|
| Protein accession | YP_002127273 |
|---|
| Protein GI | 196157784 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0466] ATP-dependent Lon protease, bacterial type
[COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR00763] ATP-dependent protease La
[TIGR02521] type IV pilus biogenesis/stability protein PilW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00208912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGTA AACGGGTGCT CGTGGATATT TATACCGTAG GGACTATTGC TACTATTTTG
CAGTTATTAA AGCTGCCTGA CGGTACGGTT AAGGTACTGG TTGAAGGAAG CGTGCGTGGC
GAAATAGAAA GCTATAAGCA GTCCGATCCT TTCTTTGTTG CTAATGTCGA TAAGTTAGAA
GACGAAGGCA TTGATGAAAG CGAGCAAGAA GTGTTAATTC GCTCGGCGGT TTCGCAGTTT
GAAGGCTACG TTAAGCTTAA TAAGAAAATA CCGCCAGAAG TACTGACTTC GCTTAATGGT
ATTGAAGATG CAGCGCGTTT AGCTGACACC ATGGCAGCGC ACATGCCGCT GAAACTTACC
GAAAAACAAA AAGTGCTTGA GATGCAGGGC GTAAATGAGC GTTTAGAATA CCTCATGGCA
CTGATGGAAG GTGAGATTGA TTTGCTGCAG GTCGAAAAGA AAATTCGAAC CCGCGTTAAG
AAGCAAATGG AAAAAAGCCA GCGCGAATAT TATTTGAATG AACAAATGAA GGCGATTCAA
AAAGAACTCG GTGAGTTAGA TGACGCGCCA GATGAGTTCG AAGCGCTGTC TAAAAAAATT
ACCGACGCGA AGATGCCAAA AGAAGCGGAA GACAAAGCGA AAGCAGAGCT TCAAAAGCTT
AAGATGATGT CGCCCATGTC GGCGGAAGCT ACCGTACTTC GTAGTTACAT CGAATGGCTG
ACCAACGTGC CTTGGAACAA GCGTTCGCCG GTTAAGAAAG ATCTTTCTCG TGCAGAAGGC
GTGCTTAATG AAGATCACTA CGGTCTTGAA AAGGTAAAAG AGCGTATTCT TGAATACCTC
GCAGTTCAAC AGCGTGTTAA AAAGCTTAAA GGCCCAATTC TGTGCCTTGT AGGTCCTCCA
GGTGTAGGTA AAACCTCGTT AGGGCAATCT ATTGCTAAAG CGACTGGACG CAAATATGTA
CGTATGGCCC TAGGTGGCGT GCGCGATGAA GCTGAGATTC GCGGTCATAG ACGTACTTAT
ATTGGCTCTT TGCCGGGTAA ACTGGTGCAG AAAATGGCAA AGGTTGGCGT AAAAAATCCG
CTGTTCTTGT TAGATGAAAT CGACAAGATG TCTTCGGATA TGCGCGGTGA CCCAGCTTCG
GCACTACTTG AAGTACTAGA CCCTGAACAA AACAACAGTT TCAGCGATCA CTACTTAGAA
GTGGATTACG ACTTGTCTGA CGTTATGTTC GTCGCCACTT CAAATAGTAT GAACATTCCT
GGGCCGCTAC TTGATCGTAT GGAAGTGATT CGTCTCTCTG GTTACACCGA AGACGAGAAG
CTAAACATTG CGAAGAACCA CTTAATTGGT AAGCAAATGG AGCGTAACGG GCTTAAAGCA
AAAGAGCTAG AAATTACTGA CTCTGCTGTT ATTGGTATGA TTCGCTACTA CACCCGAGAA
GCAGGTGTGC GTAGTTTAGA ACGCGAAGTG TCTAAAGTCT GTCGCAAGGC CGTGAAAGAT
ATCTTGCTTA AGAAGAGCAA AGATAAATTC TACAAATCAG CGATAGACTT AGCGCCTGAG
AATGGTGACA TTGCAAACAG CTATGGTACG TTTAAGTGTC AAAACGGGGA ATACGATAAA
GCTAAAGCTT ATTTCTTTGA TGCTATCAAC AACCGCCTTT ATGCAAATGC AGCGCAAACT
TACGAAAACC TTGCGCTATG TGCACAAAGC CAAGGAAAAG TGGATGAGGC GATAGGCTAC
CTTCAAGACG CCTTGAAACA CCAACCAGCC CGAGGAAAAA CCCTCTTTCT ATTAAGCGAG
CTCTACGCTG TGTCTGAGCA GTGGGGCCTT GCTGAGTCTT CATTGAGTAA ATACGAGCGC
GTCGCAAAAA TCACACCTGA CTATTTATGG TTAGCGTATG AAGTTGCCAA AGGCCAAGGG
GATCTCGAAG CGGCTAGCGA CTATGGCGAA ATGATGGTTT CGGTGTTTCC CGAAAGTGAA
CTGACGAAAC GCTACCTTGT TCAACGAGAT AGTTTGCAAA ATAGGGTCGT TAGAACTGTT
AAGTCTTCGC CTGTAAACGA AGTAGAAAGC CAGCAGGCAG GCGCTCAAGT GGAAAAGCAA
AAACAGGGCG AAAAGGCAGA GCAATCAACC ACTTCAGAGG CAGAACTTGA TGATGCGGGG
GAGCAAAGCC AGCGTGTTGA GCCAAATGAC GATGAGCAAA CTACAACTTC AACATCCCCT
TCAGATAACG AACAAAAGCA AAATATTGAA TTATCTGAGC AAAGTGACAA ATTCCATGTA
GTAAAAGAAG GTGAAAACTT ATATCGTATT TCTTTATTGC ACAATATCAA AATGGCAACA
CTGCTAAAGT GGAATAACCT AGAAAATACT GGCGCTATTA TTGCTGGTCA GACGCTTTGG
TTAGTACCAC CGAATATGCA GGAGGAATAA
|
|---|
| Protein sequence | MERKRVLVDI YTVGTIATIL QLLKLPDGTV KVLVEGSVRG EIESYKQSDP FFVANVDKLE
DEGIDESEQE VLIRSAVSQF EGYVKLNKKI PPEVLTSLNG IEDAARLADT MAAHMPLKLT
EKQKVLEMQG VNERLEYLMA LMEGEIDLLQ VEKKIRTRVK KQMEKSQREY YLNEQMKAIQ
KELGELDDAP DEFEALSKKI TDAKMPKEAE DKAKAELQKL KMMSPMSAEA TVLRSYIEWL
TNVPWNKRSP VKKDLSRAEG VLNEDHYGLE KVKERILEYL AVQQRVKKLK GPILCLVGPP
GVGKTSLGQS IAKATGRKYV RMALGGVRDE AEIRGHRRTY IGSLPGKLVQ KMAKVGVKNP
LFLLDEIDKM SSDMRGDPAS ALLEVLDPEQ NNSFSDHYLE VDYDLSDVMF VATSNSMNIP
GPLLDRMEVI RLSGYTEDEK LNIAKNHLIG KQMERNGLKA KELEITDSAV IGMIRYYTRE
AGVRSLEREV SKVCRKAVKD ILLKKSKDKF YKSAIDLAPE NGDIANSYGT FKCQNGEYDK
AKAYFFDAIN NRLYANAAQT YENLALCAQS QGKVDEAIGY LQDALKHQPA RGKTLFLLSE
LYAVSEQWGL AESSLSKYER VAKITPDYLW LAYEVAKGQG DLEAASDYGE MMVSVFPESE
LTKRYLVQRD SLQNRVVRTV KSSPVNEVES QQAGAQVEKQ KQGEKAEQST TSEAELDDAG
EQSQRVEPND DEQTTTSTSP SDNEQKQNIE LSEQSDKFHV VKEGENLYRI SLLHNIKMAT
LLKWNNLENT GAIIAGQTLW LVPPNMQEE
|
|---|
| |