Gene MADE_02981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02981 
Symbol 
ID6777409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand- 
Start bp3232190 
End bp3233308 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content48% 
IMG OID642756432 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_002127271 
Protein GI196157782 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTGCAG AAAGCCCTAT TAAACGCAGA AAGTCTACGC GTATTAATGT AGGTAATGTT 
CCCATTGGCG ATGGTGCTCC CATTGCTGTT CAATCCATGA CAAATACTCG CACCACAGAT 
GTGGCAGCGA CAGTAGATCA GATAAACCGA ATTGTAGCTG TCGGTGGTGA GATAGTTCGT 
GTATCTGTAC CTACCATGGA AGCGGCAGAA GCATTCAAGG AAATAAAGAA GCAGGTAAGC 
GTACCCTTGG TCGCCGATAT TCACTTTGAC TATCGCATAG CCCTGAAAGT GGCAGAGTAC 
GGCGTAGACT GCTTGCGCAT AAACCCGGGC AACATTGGCA ATATGGAGCG CGTTCGCTCT 
GTGGTTGACT GCGCGAAAGA CAAAAATATT CCTATTCGGA TTGGTGTTAA TGGCGGATCG 
CTAGAGAAAG ACTTACAAGA AAAGTATGGT GAGCCCACGC CAGAAGCGCT GGTTGAGTCA 
GCCATGCGCC ATGTAGATAT TCTAGATAAG CTCAATTTTG ACCAGTTCAA AGTCAGTGTT 
AAAGCTTCTG ATGTATTTTT GGCTGTTGGC GCCTATCGCT TATTGGCACA AAAAATCGAC 
CAACCCCTTC ATTTAGGTAT TACCGAAGCC GGTGGGCAAC GAGCTGGGGC GGTTAAAAGC 
GCCGTCGGTT TGGGTATGCT TCTGGCCGAA GGCATAGGTG ATACAGTACG TGTTTCACTT 
GCTGCTGACC CGGTAGAAGA AATCAAAGTT GGCTTCGATA TCTTAAAGTC GCTGCGCATT 
CGCTCTCGCG GTATCAACTT TATTGCATGC CCTAGCTGCT CAAGACAAGA GTTTGACGTT 
ATCGGCACGG TAAACGCGTT AGAGCAGAGG CTAGAAGATA TTCTAACCCC AATGGATGTT 
TCCATTATCG GGTGTGTGGT TAACGGCCCT GGGGAAGCTG AAGTATCAGA CTTAGGGCTT 
ACCGGCGCAC GCAATATGAG CGGCTTATAC GAAGACGGGA AACGGGTTAA AGAGCGCCTT 
CCAAATGACG ATCTCGTTGA CAAGCTAGAA GCGAAAATCC GTGCTAAAGC AGCGCGCCTA 
AGCGAGCAAA ATAAAATTCA GGTTTCGGTG AAAGACTAA
 
Protein sequence
MFAESPIKRR KSTRINVGNV PIGDGAPIAV QSMTNTRTTD VAATVDQINR IVAVGGEIVR 
VSVPTMEAAE AFKEIKKQVS VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNMERVRS 
VVDCAKDKNI PIRIGVNGGS LEKDLQEKYG EPTPEALVES AMRHVDILDK LNFDQFKVSV 
KASDVFLAVG AYRLLAQKID QPLHLGITEA GGQRAGAVKS AVGLGMLLAE GIGDTVRVSL 
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV IGTVNALEQR LEDILTPMDV 
SIIGCVVNGP GEAEVSDLGL TGARNMSGLY EDGKRVKERL PNDDLVDKLE AKIRAKAARL 
SEQNKIQVSV KD