Gene MADE_02979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02979 
Symbol 
ID6778934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand- 
Start bp3230190 
End bp3230810 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content44% 
IMG OID642756430 
Productputative membrane-associated protein with TPR-like domain 
Protein accessionYP_002127269 
Protein GI196157780 
COG category[S] Function unknown 
COG ID[COG2976] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.364491 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACAGT TCGCAACAGA AGAACAACAA GTAGAAGCGA TAAAGCGTTT TTGGAAAGAG 
CACGGTACTG CCATCATTGT GGGCGCAGCG CTAGGTTTAG GCGGCCTTTG GGGCTGGCGC 
TACTATTCAG AAACACAAAT TGAGAGCAAA GAAGCAGCAT CAGTTGCTTA TCAAAATGCG 
GTTGAAACCT TCGGAAGCGA AGGTAGCGAT GCTAAAGTGA ATGCGTTCAT TGAAGAAAAC 
AAAGACAGTG GCTATGCCAG CATTGCCGGT CTTCTTGCCG CGAAACAAGC AGTAGACGCC 
GGCGATTTAG ATGCCGCTGC GTCTCATTTA AATAGCGTAG TCACCTTTGC TGAAAATGAC 
GAGCTTAAGG TACTTGCGTC ACTTCGTTTG TCTCGAGTGC AAATTGAAAT GAACCAGCTG 
GACGCGGCGT TGTCTACGCT TAGCAACGTA ACTAACGACG CATTTTCAGC AGAGATTTCT 
GAATTAAAAG GCGATGTGTA TCAAAAACAA GGTAAGTTTG ATGATGCTCG TTTAGCTTAT 
TCAAATGCGT TAGAAAAAAA TGCCAATAAC CCGCTTTTAC AAATGAAGCT AGATAACTTA 
TCGGTTTCAG CATCTCAGTA A
 
Protein sequence
MEQFATEEQQ VEAIKRFWKE HGTAIIVGAA LGLGGLWGWR YYSETQIESK EAASVAYQNA 
VETFGSEGSD AKVNAFIEEN KDSGYASIAG LLAAKQAVDA GDLDAAASHL NSVVTFAEND 
ELKVLASLRL SRVQIEMNQL DAALSTLSNV TNDAFSAEIS ELKGDVYQKQ GKFDDARLAY 
SNALEKNANN PLLQMKLDNL SVSASQ