| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02978 |
|---|
| Symbol | |
|---|
| ID | 6778976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3228886 |
|---|
| End bp | 3230094 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642756429 |
|---|
| Product | outer membrane protein assembly complex subunit YfgL |
|---|
| Protein accession | YP_002127268 |
|---|
| Protein GI | 196157779 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1520] FOG: WD40-like repeat |
|---|
| TIGRFAM ID | [TIGR03300] outer membrane assembly lipoprotein YfgL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.373211 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAG CAGTGTCTAT CACAATGTCT GGCTGCTCTA CAATTTCAGA CTGGTTTGCT
GACGAAGAAG AAATCGAAAT TCGTCGTTTA AAACCAATTG AAGCCAAATT CTCTCCAACG
CTAGCTTGGG AGCGTGATAT TGGTGATGGT GTTGATCATT ACTTTTCTCG CCTTCGTCCT
GTCTATGCTT ATAATAAGCT CTACGCAGCA GACCGTCACG GCGCAGTAGT GGCGATGGAG
CCGGAAACGG GTAAAGTGTT GTGGGAAAAA GATTTCGCGC AATTTCGCTC TGAAAGCATG
ATGAGCGCAG TAACCAAATT ATGGCGCAGC GGTGAAACAG CACGGATCGG TGGTATTTCA
GTAGCAGATA GACACGTATT TATTGGTACT GAAAATGGCT ATATCGCCGC GATGGACGCA
GAAACCGGCG AACTGGCGTG GGATGCAACC GTGCCAGGTG AAATCTTAGC GGCGCCAGCT
GCCGATGAGG GTATCCTTGT GGTAAACACA GGTGCAGGTA GCCTTTTTGG CTTCAATACC
CGTACTGGCG AAGAGGTGTG GAGACATGAA GGTGACACGC CCCCGTTAAC ACTTCGTGGT
ATTTCAGGTC CTATCGCCTC AAACGGTGGT GTCATAGTTG GAACACCCAT CGGAAAAATT
CAGGTAAACC TTATCGAAAC CGGTGTGTTG GCGTGGGAAA CGGTTATAGC AACACCATCA
GGTGCAACAG AACTTGAGCG TATTGTCGAT ATTGATACAA CACCTGTTTT ATTTGGTGGA
ACAGTTTACA CGGTTTCGTA TAACGGCACG CTAGCAGCCG TTGAATTGCG CTCGGGCCGG
GTTATTTGGA AGCGTGAATA CGCATCGTTT CGTAACTTGA ACATCGACGG CAATAAGATT
TTTGTTGTTG ATAACAACTC AAATGTATAC GCGCTGGATA GACGAAATGG CGTAGAGCTA
TGGTCTCAGG GTTTGCTCAA GAAGCGCTCA TTAACTGCGG CTACACCGGT TGGCGATCAC
ATTGTGGTTG GCGACAACTG GGGCTTCTTG CATTGGATTG AGCAAGAAAC TGGCGAAGTG
GTAGCGCGAC TGGATGTGGG TGGCGATGAC GAAGACGACG CTATTTTCGC AGCACCGCTA
AAAGTTGACG ACAGTGTTGT TGCTGTTACG CGAAATGGTG TAGTGGCATC GGTACAAGTA
CCTAACTAA
|
|---|
| Protein sequence | MALAVSITMS GCSTISDWFA DEEEIEIRRL KPIEAKFSPT LAWERDIGDG VDHYFSRLRP
VYAYNKLYAA DRHGAVVAME PETGKVLWEK DFAQFRSESM MSAVTKLWRS GETARIGGIS
VADRHVFIGT ENGYIAAMDA ETGELAWDAT VPGEILAAPA ADEGILVVNT GAGSLFGFNT
RTGEEVWRHE GDTPPLTLRG ISGPIASNGG VIVGTPIGKI QVNLIETGVL AWETVIATPS
GATELERIVD IDTTPVLFGG TVYTVSYNGT LAAVELRSGR VIWKREYASF RNLNIDGNKI
FVVDNNSNVY ALDRRNGVEL WSQGLLKKRS LTAATPVGDH IVVGDNWGFL HWIEQETGEV
VARLDVGGDD EDDAIFAAPL KVDDSVVAVT RNGVVASVQV PN
|
|---|
| |