| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02941 |
|---|
| Symbol | |
|---|
| ID | 6778726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3186481 |
|---|
| End bp | 3187848 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642756390 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | YP_002127231 |
|---|
| Protein GI | 196157742 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.107369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAA AAAGTGGTGG TGAGAAAAAA GACTGGCTTC AACGATTAAT GCGCGGGTGG
CTTGCGCCAC CTCCGGGGCA AGATTGGGTG TTAGAAGCCG AGTGGTCACG GATTATGCAA
ACGCCAGTAA AGGCAAAGGG GCTATTGTAC CTCGTATCCA TCGTACTTTT TCTTTTAGTG
GTTTGGTCGT ATTTTGCCGA AATCGACGAG GTGGCAAAAG GCGACGGGAA GGTTATATCG
TCTCAACAGC TTCAGGTGCT GCAATCGTAT GATGGCGGAA TTGTTCAAGA CATTTTAGTG
GCAGAGGGGC AAACCGTAAA AGCGGGGCAA GTTTTGCTTA GGGTTGACCC GACGCGATTT
CTATCCAGCC TTGAAGAGAA CACCACACAA TTTGCTGCGC TCGCAGCAAA AGTGCAAAGA
CTGTCGGCGC TTACTCAAGG TAAGGCACTG AGGTTTAATA AAGAGTTGCA AGAGCAGGCC
CCCAGCATTA TCGAAAACGA GCGCAAGCTT TATAACTCGA ATCTGGCGGA GCTTGACGAA
GTAGCCGCTG GCTCAGATTC ACGTATTATG CAGCGCCGCC AAGATGTGGA AGAGGAACGT
GCAAACCTTT CCCAATATCA AAATGTACTG TCTCTAACGA GAAAAGAGTT ATCCGTTACA
AAGCCGCTGC TTGCTTCAGG TGCCGTTTCG GAAATCGAAA TTCTCAGGTT AGAGCGACAA
GTGGTAGAAC TTGAAGGCAA TATCACGAAG TCTAAGGTGG CCATCGAACG CGGACTTAAT
GCCATCGAAG AAGAAATCAT AAAAAAGGAA GAAAGCCGAT TAAGATTGGT AAATCGTTGG
AATCAAGAGC TTACTGATGC TACCGGCGAG ATGGCTACTT TGCAGCAATC CCAAACCAGC
TTAGAGGATG TGGTATCACA AGCTGATATC AGATCACCCA TTAACGGCAC GGTTCAGCGG
TTACTCATCA ATACGGTTGG CGGTGTTATA ACGCCAGGTA GTGCCGTGGT TGAACTTGTA
CCCCAGGATG ACCAACTTAT CGTAGAAGCC AAAGTTTCGC CGAAAGACAT CGCGTTTATT
CGACAAGGCC AGCCAGCTAT TCTTAAGTTC AGCGCTTACG ATTTTACCAT TTATGGTGGC
ATGTCAGCAG AAGTACAACA TATTAGTGCC GATGCTATTA CTAATGATAA AGATGAAACT
TACTACTTAG TAAGATTGGA AACAAAAAGG AGCATAGCAG ATGAATCCCT CGACATTTTG
CCGGGGATGA TAGTTCAGGT TGATATATTG ACGGGGAAGA AAACCGTGCT TAATTATATA
TTATCGCCAT TGTTCAACGT AACAGCCTCT GCGCTGAGGG AGCGTTAA
|
|---|
| Protein sequence | MILKSGGEKK DWLQRLMRGW LAPPPGQDWV LEAEWSRIMQ TPVKAKGLLY LVSIVLFLLV
VWSYFAEIDE VAKGDGKVIS SQQLQVLQSY DGGIVQDILV AEGQTVKAGQ VLLRVDPTRF
LSSLEENTTQ FAALAAKVQR LSALTQGKAL RFNKELQEQA PSIIENERKL YNSNLAELDE
VAAGSDSRIM QRRQDVEEER ANLSQYQNVL SLTRKELSVT KPLLASGAVS EIEILRLERQ
VVELEGNITK SKVAIERGLN AIEEEIIKKE ESRLRLVNRW NQELTDATGE MATLQQSQTS
LEDVVSQADI RSPINGTVQR LLINTVGGVI TPGSAVVELV PQDDQLIVEA KVSPKDIAFI
RQGQPAILKF SAYDFTIYGG MSAEVQHISA DAITNDKDET YYLVRLETKR SIADESLDIL
PGMIVQVDIL TGKKTVLNYI LSPLFNVTAS ALRER
|
|---|
| |