| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02924 |
|---|
| Symbol | |
|---|
| ID | 6778914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3175439 |
|---|
| End bp | 3176182 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642756373 |
|---|
| Product | flagellar basal-body rod protein FlgF |
|---|
| Protein accession | YP_002127214 |
|---|
| Protein GI | 196157725 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG4787] Flagellar basal body rod protein |
|---|
| TIGRFAM ID | [TIGR02490] flagellar basal-body rod protein FlgF
[TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.383778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAC TTCTCTATAT TTCAGCAAGT GGTGCCTCCC AAGACCTACT AGGAACAGGG
ATTAGGGCCA ATAACTTGGC TAATGCACAG ACAACGGGAT TCAGAGCGCA GTTAGAGCAG
GCAAGGTCAA TGCCGGCCTA CGGCGAAGGT TTGCCGACTC GCGTGTTTTC CATGACAGAA
AGCCCGTCGA ATAATTACGA GTCGGGTCCG ATGATTAAAA CAGACCGCGA TTTAGACGTA
GCCATTCAAG GTGATGGTTG GTTCGCTGTA CAAGATCAAA ATGGTCAAGA AGCTTACTCG
CGTGATGGAA ATTTCAAGTT GGGCGATGAC GGAATTTTGA CAGATATCCA CGATCGCGTC
GTGCTTGGTG ACAATGGGCC AATATTCCTT CCTGTTCCTT TAGATAATCT CAATATTGCG
GCCGATGGCA CGTTGTCAAT GAGACAGCTA GGTGCCCCTG CCAATGTTAT TGAAGAAGTG
GGGCGACTTA AATTGGTTAG CCCAAACTAT GCAGACATGG AACGTGGGAA CGACGGCTTA
TTTAGAATGG AAGATGGCTC AATAGCGCCA GCCAATGCCA ACGTAAAAGT AATGTCAGGC
ATGCTTGAAG GTTCCAACGT CAATGCGGTT GACGAAATGG TAGACATGAT AAGTCTGCAG
CGTCACTACG AGCTTCAAGT CAAAATGATG AAGCAAGCAG AGAAACTAGA TCAAAGTGGC
AATGCGTTAT TACGCATTCT GTAA
|
|---|
| Protein sequence | MDKLLYISAS GASQDLLGTG IRANNLANAQ TTGFRAQLEQ ARSMPAYGEG LPTRVFSMTE
SPSNNYESGP MIKTDRDLDV AIQGDGWFAV QDQNGQEAYS RDGNFKLGDD GILTDIHDRV
VLGDNGPIFL PVPLDNLNIA ADGTLSMRQL GAPANVIEEV GRLKLVSPNY ADMERGNDGL
FRMEDGSIAP ANANVKVMSG MLEGSNVNAV DEMVDMISLQ RHYELQVKMM KQAEKLDQSG
NALLRIL
|
|---|
| |