Gene MADE_02870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02870 
SymbolfliA 
ID6775540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp3121446 
End bp3122177 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content46% 
IMG OID642756319 
Productflagellar biosynthesis sigma factor 
Protein accessionYP_002127160 
Protein GI196157671 
COG category[K] Transcription 
COG ID[COG1191] DNA-directed RNA polymerase specialized sigma subunit 
TIGRFAM ID[TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000184148 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAACAGCA AGGCCGCCGC TTATCGTCAA CAAACCGATA AATCGCAGTT AGTCGAACGA 
CATGCGTCAT TGGTTAAGCG CATTGCGCAT CACTTGATTG CGCGATTGCC GGCCAGTGTT
CTTGTTGATG ACCTGATCCA GTCGGGTATG ATTGGTTTGC TAGAAGCTGC GCGTAACTTC
GACGGGTCGA AAGGCGCGAG CTTTGAAACT TTCGCAGGCA TTCGCATTCG TGGTGCTATG
TTAGATGAGA TACGTAAAGG CGATTGGACC CCGCGTTCAG TACATAGAAA TGGACGTGCT
ATTACCGAGG CTATTTCACA GGTAGAGAGC GAAACAGGCC GCGATGCGAG AGATTCTGAT
ATTGCTGATA AGCTTAATGT AAGCTTGCAG GACTATCACC AAATGCTTAA TGAGGTTAAT
GCGGGAAAGC TGGTAGGTAT TGAAGATTTA GGTGTGTCGG AAGATGTAAT TACTACTGAG
CAGAGTAGAG GTAGTGATGC GCCGCTTGAA GATTTAATGC AAGGCGCGTT TCAAAAAGCG
CTTGCCCATG CCATTACGAC ATTACCTGAA CGAGAAGCAA TTGTTCTTTC ACTGTACTAT
GATGAAGAAC TGAACTTAAG AGAAATTGGC GAAGTTCTTG ATGTTAGTGA GTCAAGAGTC
AGCCAAATTC ACAGTCAGGC CATGTTAAAA CTCAAATCAC GAATGAAGTC GTGGCAAGCT
GACGAAGAAT AG
 
Protein sequence
MNSKAAAYRQ QTDKSQLVER HASLVKRIAH HLIARLPASV LVDDLIQSGM IGLLEAARNF 
DGSKGASFET FAGIRIRGAM LDEIRKGDWT PRSVHRNGRA ITEAISQVES ETGRDARDSD
IADKLNVSLQ DYHQMLNEVN AGKLVGIEDL GVSEDVITTE QSRGSDAPLE DLMQGAFQKA
LAHAITTLPE REAIVLSLYY DEELNLREIG EVLDVSESRV SQIHSQAMLK LKSRMKSWQA
DEE