Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02778 |
Symbol | |
ID | 6776219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 3024064 |
End bp | 3026904 |
Gene Length | 2841 bp |
Protein Length | 946 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 642756224 |
Product | GGDEF protein |
Protein accession | YP_002127068 |
Protein GI | 196157579 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG3292] Predicted periplasmic ligand-binding sensor domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATACCCA TAGATGGCTT TTCGGTAGAG TCTTCTCAGC TCATGCCGCT CAACCGGTAT TTCCCTCAAT CGTGGGGAAC GAAAGACGGG CTTCCTCACA ATAGTATTCA CGCATTAGCA CAAACGTCCA ATGGGTATCT ATGGGCGGGT ACTTGGGAAG GTGTAGCTCG GTTTAATGGT CAGCAGTTCA CTGTATTTAC CCGCGGCGCG CAAACAGGAT TACCAGACTC CGGCATTCGA AGCTTGTATT ACAACAAGCC CCGCGACGAG CTACTGGTGG CAGGAAACCG AGGCGGTGTA ACGTCGCTTA TTGCAGAGCA GTGGCATGCT CAAGCGCCCC TGCCTGCAAT GGTTAATCAT GCGTTCAGAG ACAGTAATAA CGTGTTGTGG TTTGCGCTGG AAGACACGGG GATTGCAATG AGAACGCCTG ATGGCACGCA AAAAGAATAC ATTGTAAATT CGAGTGCTTA CCGCATAATC GAAGACGGAT TTGGAGTAAT CTGGTTTGCA ACAAATCAAG GCTTATTCAA ATACATAAAC GATAAATTTC AGCTAGCTGT ACCCGACCAC AACATACTGT CTGGTCCATC ATTTACTCTC GCTCTTGATA GCAAAAAACG TGTTTTAGTT GGCACGGAAC ACGGTGTTTG GCAGCAAAGA AACGGAACCT TCGCGCTACT TCACAGCTCA CTTGCCGACA AATCAGTTAG TAGTATTTTG CTTGATCATC AAAATAGCAT TTGGGTAGGC ACCATTAATC ATGGCCTCTA CCGTCTAAGT GGCTTAGGCC TAGAGAAACT GGATGCGACA ACAGGTCTTC CCAACAACCG CGTTTTTTCA CTGCTTGAAG ATTTGGAAAA AAATATCTGG ATTGGCACTA ATGGTGGTTT GTTTAGGCTG CGTCGTGCGC TATTTACCAC ATTCTCGCAA AGCCAAGGAA TGAGTGGAGA CTTTTTGCGA ACTGTTTTGC AAACGTCTGA TGGCCAACTT TTAGCAGGTG GAAGTGCTGG ATTAGATATA TTTTCCAATG ATGCGTTTTC CAGCGCATCG CTCACTACGG GTGAAGCCTT TTCTGTACTC AGTTTGGCAG CGGTAACTGA AGAAGTAACG TTAGTTGGCA CCTATACAAA AGGTGTGCTG CGATATGAAA ACGACCAACT TACTCCTTAC CTCAATAGAC ATTTAGGGTT ACCGAGTAAT GAAGTAAGGG CCATTCTTTT AGCGAGTGAT AACAGTGTTT GGTATGCCAC TGCGCAAGGT GTAGTTCAAC AAACGCCAGA TGGAAAGCTA ATCCATTTTA ATGAACAAAA TGGGCTACCT GCTCATTTTT CAATGGGCTT GGCAGAAGAT CGTGAAGGAC GAATCTGGAT TGCTACAGGG ACAGGGCTCG CCTATATCCA ACAGGGTATT GTGCACACAG TGTCGTTTCC TGAACATTCA GATGCGCAGC ACGCGTTCAG TTTTAGCGTT GTTGAAAAGG GAACTTGGAT TACAACCGAT CGAGGCCTTG CGTATTTTGA CAATGCTACT CAGGCACTTA GTGTAATCGA AAAGTCGCAG GGGCTTCCCG TAGATAAACT GTTTTCAATC GGTATAGATC ACAACAGCGG TGTATGGCTA AGTTCAAATC AAGGGGTCAT TCTCACTTCA CTATCAAGTC TTAAGGAGTG TCTGACACAT CCAAGTGCTT TATTGGAATT TGAGCATTTT AAAGAAGAAA ATGGCCTGGC GAGTATTCAA ATCAATGGTG GGTCACAGCC ATCTCAGTTT GTCGATGTAG ACGGAAATGT TTGGCTTCCT ACTGCGAAAG GGCTCGCCAC AGTAACGCCT GCAAACCTTG CCATGTTGAG TGAATTCCCT ATTCCGGTAA GTATAGAGGC GGTACTACTG GACGGTGCTG ACCAGCAATT TGATACGGAT AAAAGGGAAG TAGACGTAAC GCCGTTAACC ACACGAGTTG CGTTTCAGTA TGCAGGGTTG GGATTCGCTA TGCCTTCGCG TATAGAGTAT CAGGCTATGT TAGTAGGATA TGACCAAGAT TGGGTTAACC GTCATCAATT TAGAATGACT GAATACACTA ATTTAGCACC TGGTCGTTAT CAGTTTAAAG TACGTGCTCG TTATATTGGT GGTCCCTGGC AAGAGATTAC GTCACCATTT TCTATTCGCG TGCTCCCCAG CATTTATCAG ACATTTGCTT TTAAATTCTC GGTTTTTCTT TTCTTCTGTT TTGTTATCTA TGCACTTTAT AAAGTACGTT TTCATCACTT GAAAAAATCA GAAATGATTT TAAAACAAAG GGTCGATGAA CAAACCAGAT CACTAGAATT ACAAACCAAG CGGTTCGAGT TCCAAGCAAC TCATGATGAT CTAACGGGTA TTGCAAATAG ACGAGCATTC GACCGCTGGC TTGTACAATA TTTTGAAGAG GCTAAAGCGA AACAAACTCC TCTATGTCTT GCCGTTATCG ATATCGACCA TTTTAAACAG GTAAATGATC AGTACTCTCA CTTAGTAGGA GATAAAGTCA TAACTGAGGT GGCCCGTATA TTAAATCGCG AAGTTCCGCA TTATGCTAAA TGTGCAAGGT GGGGCGGCGA AGAGTTTACT GTGTTGTTAC CCGAATATGA CTTGATAAAT GCAAGGGTAG CTATGGATCA TGTTCGAAAA ATCGTGGCAG CACATGATTT CAGTTTTATA GCGCAAACGC TGAAAGTCAC AATCAGTATT GGTGTAGCAA GTGCAGATGG CGCGAGAGAT CACGACAGAA TGTTAACCCA TGCCGACCAA GCACTTTATA CTGCAAAAGA AAATGGCCGC AACCAAGTGA CCATTTTCTA A
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Protein sequence | MIPIDGFSVE SSQLMPLNRY FPQSWGTKDG LPHNSIHALA QTSNGYLWAG TWEGVARFNG QQFTVFTRGA QTGLPDSGIR SLYYNKPRDE LLVAGNRGGV TSLIAEQWHA QAPLPAMVNH AFRDSNNVLW FALEDTGIAM RTPDGTQKEY IVNSSAYRII EDGFGVIWFA TNQGLFKYIN DKFQLAVPDH NILSGPSFTL ALDSKKRVLV GTEHGVWQQR NGTFALLHSS LADKSVSSIL LDHQNSIWVG TINHGLYRLS GLGLEKLDAT TGLPNNRVFS LLEDLEKNIW IGTNGGLFRL RRALFTTFSQ SQGMSGDFLR TVLQTSDGQL LAGGSAGLDI FSNDAFSSAS LTTGEAFSVL SLAAVTEEVT LVGTYTKGVL RYENDQLTPY LNRHLGLPSN EVRAILLASD NSVWYATAQG VVQQTPDGKL IHFNEQNGLP AHFSMGLAED REGRIWIATG TGLAYIQQGI VHTVSFPEHS DAQHAFSFSV VEKGTWITTD RGLAYFDNAT QALSVIEKSQ GLPVDKLFSI GIDHNSGVWL SSNQGVILTS LSSLKECLTH PSALLEFEHF KEENGLASIQ INGGSQPSQF VDVDGNVWLP TAKGLATVTP ANLAMLSEFP IPVSIEAVLL DGADQQFDTD KREVDVTPLT TRVAFQYAGL GFAMPSRIEY QAMLVGYDQD WVNRHQFRMT EYTNLAPGRY QFKVRARYIG GPWQEITSPF SIRVLPSIYQ TFAFKFSVFL FFCFVIYALY KVRFHHLKKS EMILKQRVDE QTRSLELQTK RFEFQATHDD LTGIANRRAF DRWLVQYFEE AKAKQTPLCL AVIDIDHFKQ VNDQYSHLVG DKVITEVARI LNREVPHYAK CARWGGEEFT VLLPEYDLIN ARVAMDHVRK IVAAHDFSFI AQTLKVTISI GVASADGARD HDRMLTHADQ ALYTAKENGR NQVTIF
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