| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02778 |
|---|
| Symbol | |
|---|
| ID | 6776219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3024064 |
|---|
| End bp | 3026904 |
|---|
| Gene Length | 2841 bp |
|---|
| Protein Length | 946 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642756224 |
|---|
| Product | GGDEF protein |
|---|
| Protein accession | YP_002127068 |
|---|
| Protein GI | 196157579 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG3292] Predicted periplasmic ligand-binding sensor domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACCCA TAGATGGCTT TTCGGTAGAG TCTTCTCAGC TCATGCCGCT CAACCGGTAT
TTCCCTCAAT CGTGGGGAAC GAAAGACGGG CTTCCTCACA ATAGTATTCA CGCATTAGCA
CAAACGTCCA ATGGGTATCT ATGGGCGGGT ACTTGGGAAG GTGTAGCTCG GTTTAATGGT
CAGCAGTTCA CTGTATTTAC CCGCGGCGCG CAAACAGGAT TACCAGACTC CGGCATTCGA
AGCTTGTATT ACAACAAGCC CCGCGACGAG CTACTGGTGG CAGGAAACCG AGGCGGTGTA
ACGTCGCTTA TTGCAGAGCA GTGGCATGCT CAAGCGCCCC TGCCTGCAAT GGTTAATCAT
GCGTTCAGAG ACAGTAATAA CGTGTTGTGG TTTGCGCTGG AAGACACGGG GATTGCAATG
AGAACGCCTG ATGGCACGCA AAAAGAATAC ATTGTAAATT CGAGTGCTTA CCGCATAATC
GAAGACGGAT TTGGAGTAAT CTGGTTTGCA ACAAATCAAG GCTTATTCAA ATACATAAAC
GATAAATTTC AGCTAGCTGT ACCCGACCAC AACATACTGT CTGGTCCATC ATTTACTCTC
GCTCTTGATA GCAAAAAACG TGTTTTAGTT GGCACGGAAC ACGGTGTTTG GCAGCAAAGA
AACGGAACCT TCGCGCTACT TCACAGCTCA CTTGCCGACA AATCAGTTAG TAGTATTTTG
CTTGATCATC AAAATAGCAT TTGGGTAGGC ACCATTAATC ATGGCCTCTA CCGTCTAAGT
GGCTTAGGCC TAGAGAAACT GGATGCGACA ACAGGTCTTC CCAACAACCG CGTTTTTTCA
CTGCTTGAAG ATTTGGAAAA AAATATCTGG ATTGGCACTA ATGGTGGTTT GTTTAGGCTG
CGTCGTGCGC TATTTACCAC ATTCTCGCAA AGCCAAGGAA TGAGTGGAGA CTTTTTGCGA
ACTGTTTTGC AAACGTCTGA TGGCCAACTT TTAGCAGGTG GAAGTGCTGG ATTAGATATA
TTTTCCAATG ATGCGTTTTC CAGCGCATCG CTCACTACGG GTGAAGCCTT TTCTGTACTC
AGTTTGGCAG CGGTAACTGA AGAAGTAACG TTAGTTGGCA CCTATACAAA AGGTGTGCTG
CGATATGAAA ACGACCAACT TACTCCTTAC CTCAATAGAC ATTTAGGGTT ACCGAGTAAT
GAAGTAAGGG CCATTCTTTT AGCGAGTGAT AACAGTGTTT GGTATGCCAC TGCGCAAGGT
GTAGTTCAAC AAACGCCAGA TGGAAAGCTA ATCCATTTTA ATGAACAAAA TGGGCTACCT
GCTCATTTTT CAATGGGCTT GGCAGAAGAT CGTGAAGGAC GAATCTGGAT TGCTACAGGG
ACAGGGCTCG CCTATATCCA ACAGGGTATT GTGCACACAG TGTCGTTTCC TGAACATTCA
GATGCGCAGC ACGCGTTCAG TTTTAGCGTT GTTGAAAAGG GAACTTGGAT TACAACCGAT
CGAGGCCTTG CGTATTTTGA CAATGCTACT CAGGCACTTA GTGTAATCGA AAAGTCGCAG
GGGCTTCCCG TAGATAAACT GTTTTCAATC GGTATAGATC ACAACAGCGG TGTATGGCTA
AGTTCAAATC AAGGGGTCAT TCTCACTTCA CTATCAAGTC TTAAGGAGTG TCTGACACAT
CCAAGTGCTT TATTGGAATT TGAGCATTTT AAAGAAGAAA ATGGCCTGGC GAGTATTCAA
ATCAATGGTG GGTCACAGCC ATCTCAGTTT GTCGATGTAG ACGGAAATGT TTGGCTTCCT
ACTGCGAAAG GGCTCGCCAC AGTAACGCCT GCAAACCTTG CCATGTTGAG TGAATTCCCT
ATTCCGGTAA GTATAGAGGC GGTACTACTG GACGGTGCTG ACCAGCAATT TGATACGGAT
AAAAGGGAAG TAGACGTAAC GCCGTTAACC ACACGAGTTG CGTTTCAGTA TGCAGGGTTG
GGATTCGCTA TGCCTTCGCG TATAGAGTAT CAGGCTATGT TAGTAGGATA TGACCAAGAT
TGGGTTAACC GTCATCAATT TAGAATGACT GAATACACTA ATTTAGCACC TGGTCGTTAT
CAGTTTAAAG TACGTGCTCG TTATATTGGT GGTCCCTGGC AAGAGATTAC GTCACCATTT
TCTATTCGCG TGCTCCCCAG CATTTATCAG ACATTTGCTT TTAAATTCTC GGTTTTTCTT
TTCTTCTGTT TTGTTATCTA TGCACTTTAT AAAGTACGTT TTCATCACTT GAAAAAATCA
GAAATGATTT TAAAACAAAG GGTCGATGAA CAAACCAGAT CACTAGAATT ACAAACCAAG
CGGTTCGAGT TCCAAGCAAC TCATGATGAT CTAACGGGTA TTGCAAATAG ACGAGCATTC
GACCGCTGGC TTGTACAATA TTTTGAAGAG GCTAAAGCGA AACAAACTCC TCTATGTCTT
GCCGTTATCG ATATCGACCA TTTTAAACAG GTAAATGATC AGTACTCTCA CTTAGTAGGA
GATAAAGTCA TAACTGAGGT GGCCCGTATA TTAAATCGCG AAGTTCCGCA TTATGCTAAA
TGTGCAAGGT GGGGCGGCGA AGAGTTTACT GTGTTGTTAC CCGAATATGA CTTGATAAAT
GCAAGGGTAG CTATGGATCA TGTTCGAAAA ATCGTGGCAG CACATGATTT CAGTTTTATA
GCGCAAACGC TGAAAGTCAC AATCAGTATT GGTGTAGCAA GTGCAGATGG CGCGAGAGAT
CACGACAGAA TGTTAACCCA TGCCGACCAA GCACTTTATA CTGCAAAAGA AAATGGCCGC
AACCAAGTGA CCATTTTCTA A
|
|---|
| Protein sequence | MIPIDGFSVE SSQLMPLNRY FPQSWGTKDG LPHNSIHALA QTSNGYLWAG TWEGVARFNG
QQFTVFTRGA QTGLPDSGIR SLYYNKPRDE LLVAGNRGGV TSLIAEQWHA QAPLPAMVNH
AFRDSNNVLW FALEDTGIAM RTPDGTQKEY IVNSSAYRII EDGFGVIWFA TNQGLFKYIN
DKFQLAVPDH NILSGPSFTL ALDSKKRVLV GTEHGVWQQR NGTFALLHSS LADKSVSSIL
LDHQNSIWVG TINHGLYRLS GLGLEKLDAT TGLPNNRVFS LLEDLEKNIW IGTNGGLFRL
RRALFTTFSQ SQGMSGDFLR TVLQTSDGQL LAGGSAGLDI FSNDAFSSAS LTTGEAFSVL
SLAAVTEEVT LVGTYTKGVL RYENDQLTPY LNRHLGLPSN EVRAILLASD NSVWYATAQG
VVQQTPDGKL IHFNEQNGLP AHFSMGLAED REGRIWIATG TGLAYIQQGI VHTVSFPEHS
DAQHAFSFSV VEKGTWITTD RGLAYFDNAT QALSVIEKSQ GLPVDKLFSI GIDHNSGVWL
SSNQGVILTS LSSLKECLTH PSALLEFEHF KEENGLASIQ INGGSQPSQF VDVDGNVWLP
TAKGLATVTP ANLAMLSEFP IPVSIEAVLL DGADQQFDTD KREVDVTPLT TRVAFQYAGL
GFAMPSRIEY QAMLVGYDQD WVNRHQFRMT EYTNLAPGRY QFKVRARYIG GPWQEITSPF
SIRVLPSIYQ TFAFKFSVFL FFCFVIYALY KVRFHHLKKS EMILKQRVDE QTRSLELQTK
RFEFQATHDD LTGIANRRAF DRWLVQYFEE AKAKQTPLCL AVIDIDHFKQ VNDQYSHLVG
DKVITEVARI LNREVPHYAK CARWGGEEFT VLLPEYDLIN ARVAMDHVRK IVAAHDFSFI
AQTLKVTISI GVASADGARD HDRMLTHADQ ALYTAKENGR NQVTIF
|
|---|
| |