| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02767 |
|---|
| Symbol | |
|---|
| ID | 6778781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3014203 |
|---|
| End bp | 3015042 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642756213 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | YP_002127057 |
|---|
| Protein GI | 196157568 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCCA TACCTATTCT TTTTGAAGAC GCAAACTTAC TTGTAGTAAA TAAGCCTGTT
GGCGTTGCGA TGCACGACGC CCTAGACAGC AAGTCAGGTG ACCCGAAAGA TAACGCGCTA
GCTATCGAGC ATGAAGACAC CGACAAAAAT GCTGCACAAA AAGAAAGCTC AGCTTGCAAA
GGCGAAGATA CGCTGCGTAC TGATGGTATT GTCACCCAGC TTAAAAAGCA GCTTAGCCTT
AGCGAACTGC ATTTATGCCA CCGGTTAGAT ACGGGAACAT CGGGCTGCTT GTGTTTGGCG
AAGAATGCAA AAACAGCGGC TGAAATTGGC GAGCTGTTTT CTTCACGACG CATCGGTAAA
TTTTATTTGG CCTTAAGTGA ACACAAGCCT AAGAAGAAAC AAGGTGCAAT CATCGGCGAT
ATGAAAAACC GTCGTGGCGG TCAGCGCATC TTGTTAAAGT CGCAGGAAAA CCCCGCTATT
ACCCAGTTCT TCAGCCATGC CGCTAAACCG GGCACACGAG GCTTTATTGT CAAACCCCAT
TCAGGCAAAA CACACCAAAT CCGCGTGGCA TTAAAAAGTA TTGGCGCCCC CATTTTAGGC
GACAGTCTAT ACGGTGGTGC GCCCTCCGAC AGACTTTACC TTCACGCATG GCACTTGCGC
CTGCCTTTAT CTGCCGGAGA GCTTACCATC ACTGCGCCTT TCGATACCGG TCGCGTGGTC
AATGAATCAG AAGTACAGGC TTGGTATAGC GCTCTTCAAC AGCCAGATAG CTACCCTTGG
CCATCGCTGC CAGCCCGGTT TTCAACTCCC CCTATTGATA AATTAAACGT GTTAGGTTAA
|
|---|
| Protein sequence | MQPIPILFED ANLLVVNKPV GVAMHDALDS KSGDPKDNAL AIEHEDTDKN AAQKESSACK
GEDTLRTDGI VTQLKKQLSL SELHLCHRLD TGTSGCLCLA KNAKTAAEIG ELFSSRRIGK
FYLALSEHKP KKKQGAIIGD MKNRRGGQRI LLKSQENPAI TQFFSHAAKP GTRGFIVKPH
SGKTHQIRVA LKSIGAPILG DSLYGGAPSD RLYLHAWHLR LPLSAGELTI TAPFDTGRVV
NESEVQAWYS ALQQPDSYPW PSLPARFSTP PIDKLNVLG
|
|---|
| |