Gene MADE_02727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02727 
Symbol 
ID6776413 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp2968807 
End bp2970822 
Gene Length2016 bp 
Protein Length671 aa 
Translation table11 
GC content46% 
IMG OID642756172 
Productexcinuclease ABC subunit B 
Protein accessionYP_002127017 
Protein GI196157528 
COG category[L] Replication, recombination and repair 
COG ID[COG0556] Helicase subunit of the DNA excision repair complex 
TIGRFAM ID[TIGR00631] excinuclease ABC, B subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAGAG GGTTTGAGCT TCATTCTAAA TACAAGCCAG CGGGCGACCA GCCTAAGGCG 
ATAGAAGCTT TAGTGGACGG TTTAGAAAGC GGGTTGGCGG GTCAAACACT CTTAGGGGTG
ACGGGGTCGG GTAAAACCTT CACCATGGCG AATGTTATTA AAGAAGTTCA GCGCCCCACG
CTTATTCTTG CGCACAACAA AACCCTGGCA GCACAGCTAT ATGGGGAAAT GAAGGAATTC
TTTCCTAATA ATGCGGTGGA GTACTTTGTT TCTTACTATG ACTATTACCA GCCCGAAGCT
TATGTACCAA GTACAGATAC CTTTATAGAG AAAGACGCGT CTATTAATGA CCACATTGAA
CAAATGCGAC TATCGGCCAC CAAAGCGCTG ATGGAGCGCA GAGACGTTGT TATTGTGGCA
AGTGTGTCTG CCATTTATGG TTTGGGCGAC CCTGAATCTT ACATGAAAAT GTTGTTGCAC
CTACGTCAGG GCGACACCAT GGACCAGCGT GATATCTTAC GTCGCCTTGC AGAGTTACAG
TACAAACGCA ACGATTTAGC CTTTGAGCGA GGCACGTTTC GAGTTCGAGG CGATGTGATA
GATATCTTCC CCGCTGACTC AGAGAAGCAA GCGGTAAGGG TGGAATTGTT TGACGACGAA
ATTGATAAGA TTAGTTTATT CGACCCTTTA ACTGGGGCGG TAGATAAGTC AGTGATCCGC
GCCACCGTTT TTCCGAAAAC TCACTACGTA ACACCACGAG AAAAAATATT AAATGCCATT
GAGCATATTA AGGATGAACT CGGAGGGCGC AAAAAGCAGC TTCAAGAGGC AAATAAACTT
ATTGAAGAGC AGCGCATTTC TCAGCGAACT CAGTTCGATA TCGAGATGAT GATGGAACTA
GGCTACTGCT CGGGCATAGA AAACTATTCT CGTTATCTTT CTGGCCGCGC TCCGGGCGAG
CCGCCACCTA CATTATTGGA CTATTTTCCG GCTGATGGTT TGATGTTTAT CGACGAGTCT
CACGTTACGG TTTCTCAAGT CGGTGCTATG TATCGAGGTG ACCGGTCGAG AAAAGAAACG
CTAGTGGAGT TTGGGTTTCG ACTGCCGTCT GCCCTAGATA ATAGGCCGTT AAAGTTTGAA
GAGTTTGAGC AAATTTGCCC TCAAACGATT TATGTGTCGG CGACACCGGG TGATTACGAA
CTAAGGAAAA CAGAGGGCGA GATTGTCGAG CAGGTCGTAC GCCCAACAGG CTTACTCGAC
CCCATTATTG AAGTTCGCCC CGTTGCTACG CAAGTTGACG ATGTACTGTC TGAAATTAAA
AAACGTGTTG AGCTAGATGA ACGGGTACTC ATCACTACGC TCACTAAGCG CATGGCCGAA
GATTTAAGTG AATATTTAAA TGAACACGGC GTTAAAGTGC GTTATCTGCA CTCGGACATA
GATACCGTTG AACGTATTGA GATCATTCGC GATCTACGCT TAGGTAAATT CGATGTGCTG
GTGGGGATTA ACCTGTTGCG TGAAGGTTTG GACATGCCCG AGGTATCATT GGTTGCTATT
TTAGATGCAG ACAAAGAAGG CTTTTTGCGT GCAGAGCGCT CTCTTATTCA AACCATAGGT
CGTGCCGCGC GACACATAAA CGGTCGTGCC ATACTGTATG CAGACACGAT TACCAAGTCG
ATGAAAAAAG CGATGGACGA AACCGAACGT CGTCGTGAAA AGCAAATGGC TCACAACGAA
GCAAATAACA TTACCCCCAT GCGACTTAAT AAACCTATTA CCGATATCAT GGATTTAGGG
GAAAGTGCGC ATCCTGCATC AGGTAAGGTA AGGCTTAGAA AAGTTGAAGA GAAGAAGAGT
AAACAAAAAG CAGCGAGTGC GACTGAGTTG ATGGATCAAA TTACCGAACT TGAAAAGCAA
ATGTTCGAAT ATGCCCGCGA GTTAGAGTTT GAAAAGGCTG CATCGCTACG CGACGATATT
GAAGCACTAC GCAAGCAAGT TGTCGCGCTC TCCTAA
 
Protein sequence
MSRGFELHSK YKPAGDQPKA IEALVDGLES GLAGQTLLGV TGSGKTFTMA NVIKEVQRPT 
LILAHNKTLA AQLYGEMKEF FPNNAVEYFV SYYDYYQPEA YVPSTDTFIE KDASINDHIE
QMRLSATKAL MERRDVVIVA SVSAIYGLGD PESYMKMLLH LRQGDTMDQR DILRRLAELQ
YKRNDLAFER GTFRVRGDVI DIFPADSEKQ AVRVELFDDE IDKISLFDPL TGAVDKSVIR
ATVFPKTHYV TPREKILNAI EHIKDELGGR KKQLQEANKL IEEQRISQRT QFDIEMMMEL
GYCSGIENYS RYLSGRAPGE PPPTLLDYFP ADGLMFIDES HVTVSQVGAM YRGDRSRKET
LVEFGFRLPS ALDNRPLKFE EFEQICPQTI YVSATPGDYE LRKTEGEIVE QVVRPTGLLD
PIIEVRPVAT QVDDVLSEIK KRVELDERVL ITTLTKRMAE DLSEYLNEHG VKVRYLHSDI
DTVERIEIIR DLRLGKFDVL VGINLLREGL DMPEVSLVAI LDADKEGFLR AERSLIQTIG
RAARHINGRA ILYADTITKS MKKAMDETER RREKQMAHNE ANNITPMRLN KPITDIMDLG
ESAHPASGKV RLRKVEEKKS KQKAASATEL MDQITELEKQ MFEYARELEF EKAASLRDDI
EALRKQVVAL S