| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02671 |
|---|
| Symbol | |
|---|
| ID | 6777675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 2901786 |
|---|
| End bp | 2903381 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642756112 |
|---|
| Product | predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| Protein accession | YP_002126961 |
|---|
| Protein GI | 196157472 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTAATG TTCAGGGTTT AGGCTTTCGT TTCGCACTTT TTTTGGTGAT TGCTGCGATG
CTAGTGGTGC TGACCACCGC AGAGTTTTTT TATCGCGCCA CCTACAAACA TGAAATTAGT
GAAGCGAACC AAGATATCAA AGAGCTTTAC CGAACTGTTG GTGCAACCGC ATCGATAGCG
GCTTTCTTAG AAGATGAAGA CCTGGCTAAA GAGGCGATTA ATGGTTTAGT TAAGAGTGAT
AAAATTTTAG CGGCCTCTAT TAAAAGTGAC GCCCTTTATT ATCAATTCAA CGTAACAGAG
GCAATTAACT TAAATTCTGA GCCTCGGGTA TTTTTAGTAC GGCATCCGTT TATACCTGAA
GAAACATTAG CGGAAGTAAA CATATACCCA AACTTTGATC ATATTATCCG CCAAGCTGAG
ACAATCAGTA CCGACAATAG CTATTCGCTA TACGTGGAAG CACTTGTCGT AGGTATTGTT
GCGTTAATTA TCGCCTACTA CATCATAATT TTACCTATGC TCCGCGTTAG CCGCTCCTTG
CACGAAATTA CCCCCGGCAC AACACAGCGC ATTGCTGTGC CAGATTATCA CGCCCGCAGT
GAGATAGGCG TATTAGTCGA TGATACCAAC CAGCTATTAA GCAAAGTGGA GGAGCAGTTC
TCTCAAGAGC GGCAGCTAAG AGAAGAAATC GAATTTTTGG AAAAACGCTT TAGGATGCTG
TTCGAAAATG CCAAAACTGC AACCGTTTTA ATGACGGAAA ACGGGGTTAT CGAGCTTAGA
AACCAGGCAT TCAATGACTT GGTAGAAAAG GTTGGCCTTG GAATTAAGCA AGGCTATGGC
GAACTACTCG AAGAGTTATT TGAAAACGCA ACGTTGATGA AAGCCTCACT CAAAGAGGCC
TTTGCACGAA ATGAATTCGC TACCGGCGAG TATAAACTCG TATCTGCGGT TAGCGATAAC
GTCACGTGGG TGCAATTAAT CGCAAGCCCG CTGCTGACCG ACGAAGGCGA GCGTTACTAC
CAGCTTACGT TAAATGACAT TTCAAGCCGA AAACAAGAGC TTCAAAAACT AGCGCTGCAA
GCGGACTTCG ATGCTTTAAC TGGCATTTAT AACCGAAATG GTGGTGAAAA GCTTATTGCT
AAGTTGATGA GAAAAGAGCA TCACTTTGCG TTAGCGCTTA TAGACTTAAA CGGGTTTAAA
GCGGTTAATG ACATTTACGG CCACGACGCA GGCGATGAAG TACTTATTTT CGTTGCTGAA
CAGTTGAAAG AAAATATACG CAAAAATGAC GTAGCAATAC GATGGGGTGG CGATGAGTTT
GTTCTGTTAC TTCAAGCGGA AGATGAGACG TCAGTGCAAA AAGTCATAGA AAAGGTGAAC
AACGGGGTAA AGCAGCCCTT CTACTTTAAT AATGATACCA AGCCTACCGT AATTTCTATG
AGCGTGGGCG TTGCTTTCTA CCCGCAAACA AGTAGTAACA CCCATGCGCT CATAAAACTG
GCGGATATTG CTATGTATAA AGCGAAACAA AATAAGATAG CGGCTCCAGA GGACTACCTT
ATCTTTGCTC ATTCAGAAAA ACCAAAAGCC GAGTAG
|
|---|
| Protein sequence | MINVQGLGFR FALFLVIAAM LVVLTTAEFF YRATYKHEIS EANQDIKELY RTVGATASIA
AFLEDEDLAK EAINGLVKSD KILAASIKSD ALYYQFNVTE AINLNSEPRV FLVRHPFIPE
ETLAEVNIYP NFDHIIRQAE TISTDNSYSL YVEALVVGIV ALIIAYYIII LPMLRVSRSL
HEITPGTTQR IAVPDYHARS EIGVLVDDTN QLLSKVEEQF SQERQLREEI EFLEKRFRML
FENAKTATVL MTENGVIELR NQAFNDLVEK VGLGIKQGYG ELLEELFENA TLMKASLKEA
FARNEFATGE YKLVSAVSDN VTWVQLIASP LLTDEGERYY QLTLNDISSR KQELQKLALQ
ADFDALTGIY NRNGGEKLIA KLMRKEHHFA LALIDLNGFK AVNDIYGHDA GDEVLIFVAE
QLKENIRKND VAIRWGGDEF VLLLQAEDET SVQKVIEKVN NGVKQPFYFN NDTKPTVISM
SVGVAFYPQT SSNTHALIKL ADIAMYKAKQ NKIAAPEDYL IFAHSEKPKA E
|
|---|
| |