Gene MADE_02573 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02573 
SymbolprfA 
ID6778212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp2796383 
End bp2797468 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content48% 
IMG OID642756013 
Productpeptide chain release factor 1 
Protein accessionYP_002126863 
Protein GI196157374 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0263327 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGAGT CGGTAGTTAG GAAACTCGAA CACTTAGTCG AGCGTTTCGA AGAAGTTCAG 
GCGCTGTTAG GCGACCCTGA AGTTATCGGC GATCAAGATA AGTTTCGCAA CTTGTCCAAA
GAGTTTAGCC AGTTAGAAGA TGTTGTTGCC GGGTTTAATG CCTATCAACA GGCACAAGAA
AACTTGGCAT CTGCGCAAGA AATGCTAAAT GAAGACGACG CCGAGATGCG CGAAATGGCA
CAAGAAGAGA TGAAAGAAGC GAAGGGCGAA ATAGAGCGCC TTGAAACTGA ACTTCAAGTC
TTGCTTTTGC CTAAAGATCC TAACGACGAT AATAACTGCT TCTTGGAAAT CCGCGCTGGG
GCGGGTGGTG ATGAGGCGGC TATTTTCGCC GGTGACCTTT TCCGTATGTA CAGTCGTTAT
GCTGAGAGTC GCGGTTGGCG TGTAGAGTTG GTGAATGCAA ACGAAAGCGA ACACGGCGGC
TACAAAGAAG TAGTTGCTAA TGTTAGTGGT GATGGTGTTT ACGGTGTGTT GAAATTCGAA
TCAGGCGGTC ACCGCGTACA GCGCGTACCT GAGACCGAGT CACAAGGGCG TATTCATACC
TCCGCGTGTA CCGTTGCGGT ACTGCCAGAA ATTCCTGAGT CAGAAGCCAT TGAAATTAAC
CCAGCAGAGC TTCGAATCGA TACATTTCGT GCATCTGGTG CTGGTGGTCA GCACGTTAAT
AAAACTGACT CAGCTATCCG TATTACTCAC TTGCCAACAG GCTTAGTGGT TGAATGTCAG
GACGAGCGTT CGCAGCACAA AAACCGTGCT AAAGCGATGT CAGTACTGCA AGCTCGCCTA
AACCAGATTG AAGAAGAAAA ACGCGCTGCA GAAGAGGCGT CTACCCGTAA GAGCTTAGTG
GGTAGCGGCG ATCGTTCTGA GCGTATTCGC ACTTATAACT TTCCCCAAGG TCGCGTTACC
GATCATCGTA TCAACTTAAC CATCTATCGA TTAGATGAAG TGGTAGAAGG CGATTTGAAG
CAGCTTGTCG ACCCCATTCT GCAAGAGCAT CAAGCCGACT TGTTGGCGTC ACTGTCTGAC
GAATAA
 
Protein sequence
MKESVVRKLE HLVERFEEVQ ALLGDPEVIG DQDKFRNLSK EFSQLEDVVA GFNAYQQAQE 
NLASAQEMLN EDDAEMREMA QEEMKEAKGE IERLETELQV LLLPKDPNDD NNCFLEIRAG
AGGDEAAIFA GDLFRMYSRY AESRGWRVEL VNANESEHGG YKEVVANVSG DGVYGVLKFE
SGGHRVQRVP ETESQGRIHT SACTVAVLPE IPESEAIEIN PAELRIDTFR ASGAGGQHVN
KTDSAIRITH LPTGLVVECQ DERSQHKNRA KAMSVLQARL NQIEEEKRAA EEASTRKSLV
GSGDRSERIR TYNFPQGRVT DHRINLTIYR LDEVVEGDLK QLVDPILQEH QADLLASLSD
E