Gene MADE_02407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02407 
Symbol 
ID6776803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp2607589 
End bp2609100 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content44% 
IMG OID642755846 
ProductGGDEF domain protein 
Protein accessionYP_002126697 
Protein GI196157208 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATTGCAT TTTTATTATT TACGCTTAAT ACTTCGCGGT TGTCTTTGAG CTCGTTAACT 
GTTTTGGGTG TGTGGTTGAA AAAAATAAGA AAGTATCTTT TTGGTGTGGT GTTGTTTTTA
GGCGCGAGTG TTTTCAGCGC TATTCTAAAA GCGGGCCCCG AACAACAAGC CGCTTTTACT
CCATCTGAGG AGATCACTTA CTGCATTGAC CCCAACTGGG CGCCATACGA AGCGATAAGA
AATGGTATTC ATGTTGGCAT CTCAGCCCAA TATATGCGGC TGATTGCCGA GATTGCTGAC
CTTGAATTCA CGCTTGTGCC TACAGAAAGT TGGCAACAAA GCCTAGAATA TGTTCAGCAG
GGGAAGTGCA AAGTGATCCC TATGCTCAAT ACCTCAGATT ATAGAAAGCA GTTTCTAGAT
TTCAGTATTC CTTATTTTGA AGCGCCTAAT GTGCTGGTGG CGAAGGCAGG TACGCCTATG
CTTCAAGGTT ATTCCGGCGT AGGTAATCGC ACGGTAGGCA TAGTTCAAGG TTATCGACAA
GTAGAGTATA TCTCCCGCCA CTACCCAGGG TTACGGTTGA AACTAATGCC TTCGGAAGAA
GAAGGGCTGA AACAACTGGC AAATGATGAG TTTGATGTTA TGGTCGGCTC CTTGATGAGC
GTAAATATGC ACATTAACAA CTTAAAATTA AAAGACATTA ACATTGTCGG CTATGCTGAG
CCTTTCGACT CTTTGGCCTT TGGGGTAAAT AAATCGTTCG GGCACTTGGT TGATAAGCTC
AACTTTGCCA TCGAGCGGAT CCCTGAATCT CGGAAAGTGG AAATATACAA ACAATGGAAT
AATGTTCAAA TACGCTACAG TCGTAATTAT ACCGTGATGA TATTGAGCAC TATTATTATG
CTAATAGGGC TGTTGTGGTT AATATCGAGG AACCGTCATG TAGGTGCCTA CAAGCGTATT
ATTAATCAGA AAAATGAAGA AATAAGCGCG CTACAGGCCA CCTTGCTGGA AAAAAACAGA
ACCCTTGGCT TTCTTTCTGC CCATGACACA ATTACAGGGC TGTACAATCG CAATCATATG
ATTCAGCGAG CGGAAGAGGA AATCTCTCGC TTCCAGCGCT TTCAAACAAC GGCCTCGTTA
ATTATTCTTG AGCTAACCCA CTCTCATGAC GATGGGCATT CGCTTGAAGC ATCATCGCTG
GAAGAGCCGC TTAAAGTGGT TGCCACCCAA TGCTTAAATA CCGTAAGAGA GGTGGATGTG
GTGTCTCGCT TTAGTGGTGA GCAATTTATT ATACTTTGCC CACAAACCGA GGTAGGTGCT
GCAAAGATAC TCGCAGATAG ATTACTTAAA TGTGTAACGA GTCATTACCT TCTAACCGAT
AATTTTAAAG TTGCGATAGG CATGTCTGAG CTTAAGCAAT CTGAAGAGTT TTCCGACTGG
ATGGAGCGTA CCATGAAAGC CCTGTATCAA TCTAAGCGCC ACGGGTTTGG CAGTGTGAGC
ATAGCGCCAT AA
 
Protein sequence
MIAFLLFTLN TSRLSLSSLT VLGVWLKKIR KYLFGVVLFL GASVFSAILK AGPEQQAAFT 
PSEEITYCID PNWAPYEAIR NGIHVGISAQ YMRLIAEIAD LEFTLVPTES WQQSLEYVQQ
GKCKVIPMLN TSDYRKQFLD FSIPYFEAPN VLVAKAGTPM LQGYSGVGNR TVGIVQGYRQ
VEYISRHYPG LRLKLMPSEE EGLKQLANDE FDVMVGSLMS VNMHINNLKL KDINIVGYAE
PFDSLAFGVN KSFGHLVDKL NFAIERIPES RKVEIYKQWN NVQIRYSRNY TVMILSTIIM
LIGLLWLISR NRHVGAYKRI INQKNEEISA LQATLLEKNR TLGFLSAHDT ITGLYNRNHM
IQRAEEEISR FQRFQTTASL IILELTHSHD DGHSLEASSL EEPLKVVATQ CLNTVREVDV
VSRFSGEQFI ILCPQTEVGA AKILADRLLK CVTSHYLLTD NFKVAIGMSE LKQSEEFSDW
MERTMKALYQ SKRHGFGSVS IAP