| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02404 |
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| Symbol | |
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| ID | 6778060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 2600234 |
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| End bp | 2603944 |
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| Gene Length | 3711 bp |
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| Protein Length | 1236 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642755843 |
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| Product | putative sensor protein |
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| Protein accession | YP_002126694 |
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| Protein GI | 196157205 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCGTCTT TTACACCCAA GTCAACATTA AGCGAAGCGA AAGGTACGTT CGGGCTTACC
GTTGTGCTTG CGGTTGTACT TGTCATACTG GTTGTGGGGC TATTTGAGGG TAATATTAAA
GCTGCGGCAA CAGCCCAGAC GTATTCGGCA CTAGAAAAAA GTGCCGCAAA TGCGGAAGCC
GCGGCCGATA TGCGGGTACT TCAGTATACC AATGCACTTA ATTTCCTGCA CCAAACACCA
CCTATTAGCG GCATAGTTCG AGCGACAGCA AGCGGTAACG TAGACCCAAA AGATAGCACC
ACGTTAGATC AATGGAAACA TCGTTTAGAA ACGATATTTG TTGCTTTTAT TGAGAACAAC
AGTGAAATTG ACCAGTTGAG AGTTATTCAG GCTAATGACG AGGGGAGCGA GGTTATTAGG
GTGGAGCGCG AGGGCGGCGC TGTCATTATC GCCAGTGATA TCGACTTACA AACAAAGGCG
TCGAGAAATT ACTTCAAAGA GAGTGTAAAA AGCAACAAAG GTGAGTTTTA CATTTCTAGT
ATTAACTTAA ATCGTGAATA CGGAAAGTTG GAATTCCCCT ATAAAGCGGT TATCAGGTTG
TCGCTTCCTA TATTAAGTGA TGCTAATGAG CGTTACGGCT TTATAATAAT GAACGTAAAC
GCGCGCTTTT TGCTTGACCA GATGAAACAG GCGCTTGCGC AAAATCAATC GCTTTATGTA
ACTGATAATG AAGGTTACTT TACCTTACAC CCAGATAGCG ATAAATCCTT TTCTAAAGAT
TTGAACCCTT CAATAAACTG GCAAAGTGAA TTTGTGCAAC CGCTAAAGGC TGGAAGAGCG
AGGCTCTCGC CAGTGGAAGG GGAAAACATC CAATATAGCG TCTCGCGTGC ATTCACCATT
GGTGGCGGTC AGCAAGTAGC GCCTTTTTAT CTCCATGTCT CAACGCCTAA ATCTTATGTT
ACTGCGTTAA TCAATGATAA ACGAATGAGT GTTTATAGCG TACTGGTGGC GGTGACGATA
ATATTCACGG TTGCATTGCT GTTTTTTTAC CGAAGCAATC GTAAGAATAT CGAACTTGCA
AAGGTGCGCG GTGAGTCAGT GGCAATCGTT GCAATATCTA AAGACGCTAT TTTTAGCGTA
GACGCTTTTG GTAAAGTGAA AAGTTGGAAC ATGGCAGCTG AATCCCTTTT TGGTATACCC
AGCCAAGTCA TTATAAACCA ACACTTCTCC TCGTTTAAGC CGCTGTCTCC GCTCGGTTTA
GAAACCGTTC TCACCAAGGG CGGTAAGCAA GAGACATTTA CAACACCGTA CATTGACGGT
GAAAAAAACG AGCACAAACT TCTTATTACT GCATCGACGA TATGGGGTGA TAACTCACAA
TTTTCTGGCG TTGCCGTTGT CATTCGAGAT GTGACTGATG AACACAAAGC TAAAGATGCG
ATAGAAAGAG TTAATTTTAA GCTTGAAGAA AAAGTGGTCA GTAGAACGAA AGAGCTGATG
AAGGCAACGG AAGAGGCGCG TAAGGCGAGT AGCGTAAAAA GCTCATTTAT TTCCAATATT
AGTCATGAAA TGCGTACGCC ATTAAACGGG GTGGTTGGTT CACTGTCATT GCTCAAACGC
CAGCCTCTCA ATGATAAAGC TGAGCAGTTA GTGTCTATGA TGGAAATTAG CTGTAACAAT
TTAAGCGTGC TGATAAACGA CGTTCTCGAC CTATCGAAGA TTGAAGCGGG TAAATTAGAT
ATTAACCACC AGCTTTTCGA ACCTTTAACG CTGATAGAGT CTTTGGCGAA AGTGTTTGCG
GTGAAGGCTG CAACTAAGGG GCTTGAGCTA ATAGTTGATA CCACGGGGCT TCCTCGTGTA
GAGATTAATT CCGACCGCCA TAGGCTAAAT CAGGTATTAA GTAACTTATT GAATAACGCC
ATCAAGTTTA CAGAAAAAGG ACACATACAG CTAAACGCAG CGTTATACGA AAACGACGCA
GGGTTACAAC AACTGCATTT TAGCGTAAGT GACACTGGCG TGGGTATCGC CCCGGAAAGT
CAACCAAAGC TATTTACTGC ATTTACTCAA GCCGATGCTT CCGTTGCGAC TCAGTATGGT
GGAACGGGGC TTGGCTTGTC TATTTGCAAG CAGCTAACAC AGCTGTTAGG CGGGGATATA
ACGTTTAAAT CTGTGGTAGA CGTTGGAAGT ACATTTTCAT TTTACGTTAC GCTTACTGAA
AAAACTCCAG ATACCGAAGC GTCACTTGAG CGCGCGCTAG AAATGGAAAG TGCAATGCTA
AGTGGTATCA ATATAGGTGT GTCGGCAGGC TATTCGCCTC TAGAAGAGAA TATCTGTAGT
TTGGCGATGC ATGTGGGGGC AGATGCCTAC GTGTTAGACA GCAATACCGA TAAAATTGAG
TGGTCGACGT TCAACGCGGT TATTGTCGAT GAGTCTAGCC CCTTGATTAA CGATTTAGAC
AATATCTGGC ATGCGCAAAC TACTGAGCAA GAAGCCTGCG CTTTACCGGT GGTTTTCATC
CTTCAAAAAA TAGAGGGAGC GCCTTACCAA TTTAACCATA TACAGCCAAT TTATTTACCT
AAACCGCTGT TTCGTTCAAG TTTTACGCTT GTTCAACAGG GAATCGATGC AGCGCTTGGA
GGATACTCAT CGTCAATGAA CGAACTTCAT CCCAGTGACG GAAATGGCCC AAGTGACGAC
GCTTTCGAGA CGGTTAAACA GACATCAGAC CCTCAATTGT CTATTGAAGA CGCTAACCTA
CTTATTGTTG ATGATAATTT GATAAATAGA GAGGTGGCCA AAGGCGTACT GGAAAGCCTG
CCTGGTAAGA TGTTTACCTG CTGCGACGGT GAGGAAGTTA TTGCATTTTT GCAAAAATGC
GAGAAAAAAG GGCGTCGTAT CCACAGTATT TTGATGGATT GCCAAATGCC GAACATGGAT
GGATATGAAA CCACCCGGGC TATCCGTGAG GGTAAAGCTG GCCCGCTGCA TGCCAATGTG
CCCATTATCG CGATGACTGC CAACGCCATG CTTGGCGAGA AAGAGAAGTG CTTAGAAGCC
GGCATGGACG ATTTTACGAC TAAGCCCGTA ATTGCAGATG TATTGATCCC CAAAGTTAAG
CAATGGCTTA TACACCAAAC GATGGCATTA AAAAGCGAAG ACGCTAAGCG TAACAACGAA
ATGAAGAGCG ATCCGCCAGC CCTTGTGGAT AGCCTGCTAA ACGCTATCAA TAAAGAAGTA
TCTTGTAGCG GTGTGCAAGA AGAGGTGTCG ATGGATGACC GGATGAGCAG TCACAGCGAT
ACTAACGAAA CTGACACCTC AACAAGCGCC AACGAGTCTA ACGCTTTAAG CGATATACCA
GCGCCAGATA ATGGAAAGGT GAGAGAGAGT TGGGATAAAG ACGATGCGAT AGCGCGAATA
ATGGGGGATA AAGCGTTGTT TTCTCGGGTT TGCGAACTTT ACTCACAAAG TGCGCCTGAT
AAGTTAAAGC AGTTAAAAGG TGCTGTAGAG GAGCAAGACT TTACACAAGT TCAGGTGCTC
TCCTTAAAGC TTAAGGGCAT GTCAGCGGAT ATCGGTGCTG TGCAACTTAA AAAAGACTTT
GAGCTAGTAT GGGAATTATC TAAGGGGGCA CAGTGGGAAA AAGTCAAAGC CCTGCTTCCT
TCCATAGACG ACGATCTTAA TACCTTCATT GAACTTCTTG CCGTGGCCTA G
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| Protein sequence | MSSFTPKSTL SEAKGTFGLT VVLAVVLVIL VVGLFEGNIK AAATAQTYSA LEKSAANAEA
AADMRVLQYT NALNFLHQTP PISGIVRATA SGNVDPKDST TLDQWKHRLE TIFVAFIENN
SEIDQLRVIQ ANDEGSEVIR VEREGGAVII ASDIDLQTKA SRNYFKESVK SNKGEFYISS
INLNREYGKL EFPYKAVIRL SLPILSDANE RYGFIIMNVN ARFLLDQMKQ ALAQNQSLYV
TDNEGYFTLH PDSDKSFSKD LNPSINWQSE FVQPLKAGRA RLSPVEGENI QYSVSRAFTI
GGGQQVAPFY LHVSTPKSYV TALINDKRMS VYSVLVAVTI IFTVALLFFY RSNRKNIELA
KVRGESVAIV AISKDAIFSV DAFGKVKSWN MAAESLFGIP SQVIINQHFS SFKPLSPLGL
ETVLTKGGKQ ETFTTPYIDG EKNEHKLLIT ASTIWGDNSQ FSGVAVVIRD VTDEHKAKDA
IERVNFKLEE KVVSRTKELM KATEEARKAS SVKSSFISNI SHEMRTPLNG VVGSLSLLKR
QPLNDKAEQL VSMMEISCNN LSVLINDVLD LSKIEAGKLD INHQLFEPLT LIESLAKVFA
VKAATKGLEL IVDTTGLPRV EINSDRHRLN QVLSNLLNNA IKFTEKGHIQ LNAALYENDA
GLQQLHFSVS DTGVGIAPES QPKLFTAFTQ ADASVATQYG GTGLGLSICK QLTQLLGGDI
TFKSVVDVGS TFSFYVTLTE KTPDTEASLE RALEMESAML SGINIGVSAG YSPLEENICS
LAMHVGADAY VLDSNTDKIE WSTFNAVIVD ESSPLINDLD NIWHAQTTEQ EACALPVVFI
LQKIEGAPYQ FNHIQPIYLP KPLFRSSFTL VQQGIDAALG GYSSSMNELH PSDGNGPSDD
AFETVKQTSD PQLSIEDANL LIVDDNLINR EVAKGVLESL PGKMFTCCDG EEVIAFLQKC
EKKGRRIHSI LMDCQMPNMD GYETTRAIRE GKAGPLHANV PIIAMTANAM LGEKEKCLEA
GMDDFTTKPV IADVLIPKVK QWLIHQTMAL KSEDAKRNNE MKSDPPALVD SLLNAINKEV
SCSGVQEEVS MDDRMSSHSD TNETDTSTSA NESNALSDIP APDNGKVRES WDKDDAIARI
MGDKALFSRV CELYSQSAPD KLKQLKGAVE EQDFTQVQVL SLKLKGMSAD IGAVQLKKDF
ELVWELSKGA QWEKVKALLP SIDDDLNTFI ELLAVA
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