Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02385 |
Symbol | |
ID | 6776353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 2572530 |
End bp | 2574488 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642755824 |
Product | TPR domain protein |
Protein accession | YP_002126675 |
Protein GI | 196157186 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.761952 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACACCAG AAGATATCCA ACATGAAATA CGCGCTATTA AACAAGCGCT GCAACGCGCT CAATTCTTAT TAGCCAATGA ACGCGTTGAT CACCTATTGT CCACGTCGCT TAGCGAGCAG CAACGCTTAG AAGTCCATTA TCTTGCAGCG GTTACACATA GAATGGCAAA GCAATATGAT GAGGCCTTTC GTCATATCGA CGTACTGCTT TCACTTTCTC CTGATTACGG CAGGGCGTAT CAAGAGCTTG CTTATTGTCA TGAAGCGAAG GGTAACGGTA AAGAAGCGTC GAGCGCGTTT TTTAAAGCAA CGCATTTTAA TCCCGCGCTG ATCAGCAGTT GGAAAAAACT GCTGTCAATT TATCAACGTC ACAATGATGT CACTGCGGTA CAAATGGCAA CCAAGCAAAT AGCGCACTTG CAGTCGCTAC CAGCGCCTGT ATTAGGGGCT TACGACCTTA TGTACGAAAA GCAGTTCGCT GCTGCAGAGC AGGTATGCCG GCAGTTTCTG ACCAAGCACA AGCATCACCC CGAAGCAATG ATGCTACTTG CTGAAATAGG CATGCAACTC AAGGTTTATA GCGACGCTGA GTTTCTTTTA GAAAGCTGTG TTGAGCTTTA TCCAGATAAT GAAAAAGCAG CCTTAGCCTA TCAAAATGTG CTGTCTAAGT TAGGCAAGTT TCCAGAGGCG GTACAAGTGG CCCGCCAAAG GTTAGAGCAT AACCCCACTA GCTTTAGTAT AAAAACCAGC TTGGCCCATG CGCTTGTTGG TGTAGGGCAA TTAGATGAGG CCATTACTGT TTACCGTGAT GTACTTGCAG AAAACCCGGA TAGACCCAAA GTGTGGGTAT CGCTTGGCCA TGCGTTAAAA GCAAAAGGGG ATACGCCTGA TGCGGTTAGT GCGTACGAAA AGGCCATAGA CTATGCCAGT GACTACGGCG ACGCCTATTG GAGCCTCGCA AACACGAAAA CCTATAAGTT TAGTGACGCA CTACTTGCGC AAATGTCTGA ACAGCTAAAC AGCAATGCTA TAAAGTTAGA AGATAAAATA CATGTGTGCT TTGCACTAGG TAAAGGGCTT GAAGACCGGG GAGAGGCTAG CAAAGCCTTC AATTATTACC AGCAAGGTAA CAGCTTAAAG CGCAGCACCC TTCAATTTGA TATTGCAAGG ACAGAGGAAG CGCTAAACGC ACAGCAGCGC GCTTTCTCAA GTGAAGACTT TAATAAAGTA GAAGGTTGCC AAGCGCCTGA CCCTATCTTT ATTGTCGGCT TGCCGCGTGC AGGCTCAACG TTATTGGAGC AAATTCTCGC GTCACACTCA AAAGTCGATG GCACCATGGA GCTTCACGAT ATATTGGGCA TTGCTTCATC GTTAAGTCAT CAAAAGACGC CTTATCCATT GAACGTTAAT GCGTTAGATG GAGAAACGCT TGAAAAGCTT GGCGCGCGTT ATATCGAGCA AACTCGTGCT TACCGACAAG GCGCGCCATT GTTCATCGAT AAAATGCCCA ATAACTTTAT TCATATTGGC CTAATTAAGA AGATACTGCC TAACGCTAAA ATTATCGATG CGCGAAGAAA TCCTATGGAC TGCTGCTTTA GCGGCTTTAA GCAGCTATTC GGTGAGGGGC AGGAATTTAG TTACTCGCTT TCCGATATTG GGCGCTATTA CAAAGCTTAT GAAAAGCTTA TGGATCACTG GCACGCGGTG CTGCCGGGGG AGATTCTTAC CGTACAGCAC GAAGAGGTAT TAGACGATTT AGAAGGCCAA GTCAGACGTA TCTTAGATTT TTGTGGGTTA GACTTTGAAG AAGCGTGTTT AGCATTTCAC CAAACCAAGC GGGTTATTAA AACGCCGAGT TCTGAACAGG TTCGCCAACC TATCTACAAA ACAGGAATGG GGCAGTGGAA ACCTTTTGAG GTATATTTGT CGGCGCTTAA AGAGGCGTTG GGTAAATAA
|
Protein sequence | MTPEDIQHEI RAIKQALQRA QFLLANERVD HLLSTSLSEQ QRLEVHYLAA VTHRMAKQYD EAFRHIDVLL SLSPDYGRAY QELAYCHEAK GNGKEASSAF FKATHFNPAL ISSWKKLLSI YQRHNDVTAV QMATKQIAHL QSLPAPVLGA YDLMYEKQFA AAEQVCRQFL TKHKHHPEAM MLLAEIGMQL KVYSDAEFLL ESCVELYPDN EKAALAYQNV LSKLGKFPEA VQVARQRLEH NPTSFSIKTS LAHALVGVGQ LDEAITVYRD VLAENPDRPK VWVSLGHALK AKGDTPDAVS AYEKAIDYAS DYGDAYWSLA NTKTYKFSDA LLAQMSEQLN SNAIKLEDKI HVCFALGKGL EDRGEASKAF NYYQQGNSLK RSTLQFDIAR TEEALNAQQR AFSSEDFNKV EGCQAPDPIF IVGLPRAGST LLEQILASHS KVDGTMELHD ILGIASSLSH QKTPYPLNVN ALDGETLEKL GARYIEQTRA YRQGAPLFID KMPNNFIHIG LIKKILPNAK IIDARRNPMD CCFSGFKQLF GEGQEFSYSL SDIGRYYKAY EKLMDHWHAV LPGEILTVQH EEVLDDLEGQ VRRILDFCGL DFEEACLAFH QTKRVIKTPS SEQVRQPIYK TGMGQWKPFE VYLSALKEAL GK
|
| |