Gene MADE_02368 details

Gene Information

• Locus tag: MADE_02368
• Symbol: mnmA
• ID: 6776598
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 2556281
• End bp: 2557390
• Gene Length: 1110 bp
• Protein Length: 369 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 642755807
• Product: tRNA-specific 2-thiouridylase MnmA
• Protein accession: YP_002126658
• Protein GI: 196157169
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
• TIGRFAM ID: [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00392033
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGATA TTGAATCTAA CGCCAGCAAA AAAGTAATCG TCGGCATGTC CGGCGGAGTC 
GATTCTTCTG TTTCAGCCTA CCTGCTTCAA CAACAGGGTT ACCAGGTTGA AGGCCTTTTC 
ATGAAAAACT GGGAAGAGGA TGACAACGAT GAATACTGCG CTGCAGCGGA AGATTTAAAA 
GATGCGCAGG CGGTAGCTGA TAAACTAGGT ATTGAGCTAC ACACTATTAA TTTTGCTGCT 
GAATACTGGG ATAACGTGTT TGAGTATTTC TTAGAGGAAT ACAAAGCCGG CCGTACGCCA 
AACCCAGACA TCATGTGTAA CAAAGAAATC AAGTTTAAAG CGTTTCTAGA ATTTGCAGCC 
GAAGACCTTG GCGCTGACTA CATTGCTACC GGTCACTACG TGCGCCGCAG AGAGGTAGAC 
GGCAAATGGC AGATGCTTCG CGGTTTAGAT AACAACAAAG ACCAAAGTTA TTTTCTTTAC 
ACGCTTGGCG AAGAGCACGT TGCTAAAACC CTTTTCCCGG TTGGCGATAT CGAAAAGCCA 
TTAGTTCGCA AAATTGCTGA AGAGCAAGGT CTTATCACCC ATGATAAGAA AGACTCTACA 
GGGATTTGTT TTATCGGCGA GCGCAAGTTT AAAGATTTTC TAGCGCGGTA CCTTCCCGCT 
CAACCTGGGG TTATTGAAAC CGCAGAGGGT GAAGAAATTG GCCAGCACGA AGGCTTGATG 
TACCACACAC TAGGTCAGCG TAAAGGGCTA CACATTGGTG GTTTGGCGAA ATACGGTGAC 
GACCCTTGGT ATGTAGTTGA TAAAGATGTT GCTCGCAACG TGCTTATTGT GGGCCAAGGT 
GCCGACCACC CTCGCCTTTA CTCTAAAGGC TTGGTAGCAA AACAGCTGCA CTGGGTAGAT 
AGAAAAACGA TTACAGAGCC TATGCGCGCT GTAGTTAAAA CCCGTTATCG TCAGGCCGAT 
ATCCCTTGTA CAATAACGCC GACTCAAGAC GACACCATTG AAGTGATGTT TGATGAGCCA 
CAAAAGGCGG TAACGCCGGG GCAATCTGCG GTATTTTATA TTGATGAAGT ATGCCTTGGT 
GGCGGTATTA TTGAGAGTTA TATTCGCTGA 

 

Protein sequence

MSDIESNASK KVIVGMSGGV DSSVSAYLLQ QQGYQVEGLF MKNWEEDDND EYCAAAEDLK 
DAQAVADKLG IELHTINFAA EYWDNVFEYF LEEYKAGRTP NPDIMCNKEI KFKAFLEFAA 
EDLGADYIAT GHYVRRREVD GKWQMLRGLD NNKDQSYFLY TLGEEHVAKT LFPVGDIEKP 
LVRKIAEEQG LITHDKKDST GICFIGERKF KDFLARYLPA QPGVIETAEG EEIGQHEGLM 
YHTLGQRKGL HIGGLAKYGD DPWYVVDKDV ARNVLIVGQG ADHPRLYSKG LVAKQLHWVD 
RKTITEPMRA VVKTRYRQAD IPCTITPTQD DTIEVMFDEP QKAVTPGQSA VFYIDEVCLG 
GGIIESYIR