| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02367 |
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| Symbol | |
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| ID | 6779093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 2555335 |
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| End bp | 2555877 |
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| Gene Length | 543 bp |
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| Protein Length | 180 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642755806 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_002126657 |
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| Protein GI | 196157168 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.020517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTTCAA ACGCCAAAGT GGTGCTGTTT AATAAGCCCT TTCAAGTTCT TTCTCAATTT
ACCGACGCGG ACGGTAGAGA GACGCTAAAA GATTATATTG ATATTCCCGA TGTTTACGCT
GCAGGTCGCC TAGACCGAGA TTCTGAAGGC CTCTTAGTAC TCACTAATGA TGGTAAGCTT
CAACACAAAC TGGCAAACCC CAAAGCCAAG ACCAGCAAAA CCTATTGGGT ACAGGTTGAA
GGTGTAATGG ACGAAAAAGC CATGCAGGCG CTACGCGATG GTGTTGAATT AAAAGACGGC
ATGACTCGCC CAGCTAAAGT AAAAGCGATG AAGGAGCCTG ACGTATGGCC AAGAAACCCG
CCTGTGCGTT TCAGACAATC TATTCCAACT AGCTGGGTGT CGATTACCAT TACAGAAGGC
AGAAACAGAC AAGTAAGACG TATGACAGCG CACGTAGGTT TCCCTACCCT TCGCCTTATT
AGGTATAGAG TTGGCAACTG GACCATAGAT GGCATTGAAA ATGGCAAGTA CGTGAGTTTT
TGA
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| Protein sequence | MSSNAKVVLF NKPFQVLSQF TDADGRETLK DYIDIPDVYA AGRLDRDSEG LLVLTNDGKL
QHKLANPKAK TSKTYWVQVE GVMDEKAMQA LRDGVELKDG MTRPAKVKAM KEPDVWPRNP
PVRFRQSIPT SWVSITITEG RNRQVRRMTA HVGFPTLRLI RYRVGNWTID GIENGKYVSF
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