| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02357 |
|---|
| Symbol | |
|---|
| ID | 6779060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 2546537 |
|---|
| End bp | 2547763 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642755796 |
|---|
| Product | ABC transporter integral membrane subunit |
|---|
| Protein accession | YP_002126647 |
|---|
| Protein GI | 196157158 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000942492 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCTT TTGAGCTTGC CCAAAAGTTT AGAAAAACGC GTTCACAGCA GCGCTTTATT
TCCTTTATTT CAATGTCTTC TACCATTGGT ATAGGCTTGG GCTGTTTTGT ACTTATTGTG
CTTCTAAGTG TGATGAACGG CTTTGAAAAA GAGCTAACTA GCCGAATTTT AAGTGTGGTC
CCCCACGGTG AGATTTACAG TAAAAGTGAA AGCGGTATCG AAAATCTAGA GGCTCAGCTA
TATCGCTTTT CTCAAGATAG CCGTTTAGAC AGGGTAACAC CCTATACTGG CTTAACGGGC
ATGCTGCAGT CGAAAGGTGA GCTTAAAGCC ATTAGCGTAA CGGGTATACC CGTTAATAGC
GTGAAAGAAA AGTATGCCGA ACGTGTAACG AAAAATGACT GGGCAAGGTT TAGTACCCAA
GAAAATGGGT TAATTGTTGG AAAGGGGATT TTGGACTCGA TGGACCTTGC TATTGGCGAT
ACGGTTCAAA TTTTGATCCC TCAAACCACG CAGGACTTAA CCTTTAAAGC GCCGCGTTCC
ATTACCCTTA AAATAGCAGG TGTGTTGTCT GTCGGAGGGG AGCTTGATAA TCAGCTCGGC
CTAATGCACC TTAAAACTGT ATCACAGGCC ATAGGCATAA CCTCTAAAGC TCAGGGCATA
CAGTTTACAT TGAAAGACCC ATTCTCGGCT TACGATACTA TGCGCGATAT CGGATATAGC
TATCCGCAAG CGGTTTATAT GTCTGATTGG ACACGTACCC AAGGACACTT GTATAGCGAT
ATTCAGCTAG TGCGTGCAGT GGTTTATATT GCCCTTACGC TGGTTATCGC CGTTGCTTGT
TTTAATATTG TGTCGTCATT GGTAATGGCA GTGAGAGACA AACAGGCGTC CATCGCCATA
CTTAAAACAA TGGGAGCCAC AGATACGTTA ATTCGCAATA CCTTCGTGCT CCAAGGTGTA
ATAAACGGTG TGGTCGGTGT TACGGTTGGT GTAGCGCTGG CTGTAATCGT TGCTCCTAAT
TTGTCAGAGA TTGTACGCTT TATCGAGTCA GGCCTTGGGG TAGAAATTCT GTCTGGCGAT
ATTTATTTTA TCGACTTTTT ACCGTCTAGC ATGCATTGGC TAGATGTAGT TGTAACAATG
ATCGTTGCGA TGATCCTAAG TGTTGGTGCA ACCCTTTATC CCGCGCAAAA AGCAGCGAAT
ATTTCGCCGT CATCAGCGCT GCATTAA
|
|---|
| Protein sequence | MLAFELAQKF RKTRSQQRFI SFISMSSTIG IGLGCFVLIV LLSVMNGFEK ELTSRILSVV
PHGEIYSKSE SGIENLEAQL YRFSQDSRLD RVTPYTGLTG MLQSKGELKA ISVTGIPVNS
VKEKYAERVT KNDWARFSTQ ENGLIVGKGI LDSMDLAIGD TVQILIPQTT QDLTFKAPRS
ITLKIAGVLS VGGELDNQLG LMHLKTVSQA IGITSKAQGI QFTLKDPFSA YDTMRDIGYS
YPQAVYMSDW TRTQGHLYSD IQLVRAVVYI ALTLVIAVAC FNIVSSLVMA VRDKQASIAI
LKTMGATDTL IRNTFVLQGV INGVVGVTVG VALAVIVAPN LSEIVRFIES GLGVEILSGD
IYFIDFLPSS MHWLDVVVTM IVAMILSVGA TLYPAQKAAN ISPSSALH
|
|---|
| |