| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02342 |
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| Symbol | |
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| ID | 6777594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 2526167 |
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| End bp | 2529562 |
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| Gene Length | 3396 bp |
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| Protein Length | 1131 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642755781 |
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| Product | RNase E |
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| Protein accession | YP_002126632 |
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| Protein GI | 196157143 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.596666 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAATCA ATGCAACTCA ACAAGAAGAG TTGCGCGTTG CCCTAGTCGA TGGGCAACGG
TTGTACGATT TAGATATAGA GAGTCCAGGA CACGAACAAA AGAAAGCAAA TATCTACAAG
GGTAAAATTA CCCGTGTTGA ACCCAGCTTA GAAGCAGCGT TTGTTGACTA CGGCGCAGAG
CGTCATGGAT TCCTACCCCT TAAAGAAATA GCCCGCACTT ACTTCCCTAA AGGTTACAAA
TTCGAAGGCC GCCCTAACAT CAAAGATGTG ATTAAAGAAG GCCAAGAAGT TATCATCCAA
ATTGATAAAG AAGAGCGCGG CCAAAAAGGC GCGGCACTAA CCACATTTTT ATCGCTTGCG
GGAAGTTACT TAGTGCTTAT GCCAAACAAC CCTCGTGCTG GCGGTATTTC TCGCCGAATT
GAGGGTGATG AGCGCACTGA GCTTAAAGAG TCACTAAGCA AACTTGACCT TCCAGATGGC
ATGGGCCTAA TTGTTCGTAC CGCTGGTGTA GGTAAATCTT ACGAAGAATT AGAGTGGGAT
TTAAAAGTTC TTCTTAAGCA CTGGGAAGCA ATTTCAGAGG TTGCTGAAGG TCGTGAAGCA
CCGTTTTTAA TTCACCAAGA AAGCAACGTT ATTGTTCGCG CTATCCGCGA CTATCTACGT
CGTGATATTG GCGAGATTCT TATCGACAAG ACCAGCATCT ACGAGCAGGC ACTACAGCAT
ATTCAGCTAG TCCGTCCTGA TTTCGCAAGC CGTGTAAAGC TTTATCGCGG TGAAGTTCCA
TTATTTAGTC ACTATCAAAT TGAAAGCCAA ATCGAGTCAG CCTTCCAACG TGAAGTTCGC
CTGCCGTCTG GTGGTTCAAT TGTTATTGAC CCAACGGAAG CGTTGACTTC CATTGATATC
AACTCTGCCC GTGCCACTAA GGGTGGCGAT ATCGAAGAAA CAGCCCTTAA CACTAACCTA
GAAGCGGCTG ATGAAATTGC CCGTCAATTA CGCCTTCGCG ATCTAGGTGG TCTTGTTGTT
ATCGACTTCA TTGACATGAC CCCCGTTCGT CATCAGCGTG AAGTTGAAAA CCGCATGAAA
GATGCGGTAA GAAGCGACAG AGCGCGTGTA CAGTTAGGGC GTATTTCACG CTTTGGTCTA
TTAGAAATGT CACGCCAGCG CCTGCGCCCT TCTCTCGGTG AGTCTGCGCA TCACGTGTGC
CCTCGCTGTT CAGGCCACGG TACTATTCGC GGGACTGAGT CTTTGGCGCT GTCTATTCTT
CGCATACTAG AAGAAGAAAG TATTAAAGAA AATACAGGGC AAATTGAAGC GCAATTGCCT
GTACCCGTAG CAACCTACTT ACTGAACGAA AAACGTAAGT CTATTCAGCT ACTAGAAAAA
CGTCACGGTG TAGATTTGCT GCTCATTCCA AACGCGAACC TAGACACACC GCACTACCAA
GTATTGCGTC GTCGCCCTGA CGATGTGGTA TCTGAAGCCA GCTACGACGT TGAGTTAATG
CCTGCGGTAG AAGCAGAAAC TGAAACGACG ACTACGACGC CAGTTAAACG CGAAGAACCT
GCGCTTAAGG GCCTAGTTGC ACCAACGGCT GCACCGGTTG TTGCACCTAA AGAAGAGCCA
GCGAAGAAAG CTGAAGACGT GCCTTCATTA TTTGCGCGTA TTGGAAAGTG GATCAGCGAC
TTGTTTGGCT CTGAAGGTGA AGAAGAGAGC AACAAAGACA AGAAACAGCA ATCTACTGAC
ACAAATAAGA ATAGAAACAA TCGCAGCCGC AATAACGACG ACCGTCGTCG TAAGCCACGC
AATAAAAACC AGCGTCGTAA TAACTCGTCT CAAAACAGAG ACCAGAATAA AGACCAAGGT
CGTGACGAGC AGCAGGATAA TCGCAAAGCA CGCGGTGATC AGCGCCAAGA CCAGCGTCAA
GATCAAGACG ACAAGCGCAA CAACAAAGGT CGCAAGCCAC GTAAGGCGCA GCAGCCTCGC
GACGAGCAAC AAAAGCCCAA ACACGAGAAG CAAGAAGGCG AACAGCAAGA AAACCAAGCG
CAGAAGAAGC GTGAAGTTGC TGAACGCAGA AAGCGCCGTG ACAAGCGTCG TAGCGTTCGT
GTAAAGAAAG ATGACAATAC GCCAAGCATT GTAGAGCAAA CAGAAGCGCA AGCGGTACCT
GCCCAGAAGG GCAACGAAGC TGTAAAAGCA CCTCAACAGG ATGCAAAAGC GCAAAGTAAG
CCGAAAGCTG ACGCAAAGCC TCAAAAAGCG GTGAAAGCCG ATGAGGTAGA AGCACAGTCA
GGCAATACGG CTGCTCAGAA ACAAGAAACG AAAAAACCAG CTAAAAAGCC TGTAGACAAA
GCGTCTGAAG AAAAATCTGC ACGAGAAGCC GACAAGGTTG AAGGCAGCCA AACAGATAGC
GCTGACGCTA CAGAGGCGAA CAGCGAAGAA AACGGGCAAA AACGCGAAGG ACGTGGTCGT
TCGCGCCGTT CTCCTCGTCA CGTACGTGCA GCTGGTCAGC GTCGTAAGAA AGAGTCTCAG
CAAGTTGATG AAGCTGAAAC ACAAGCGAAG CAACCTGGCG AACTTGAGCC TCAAGAGCCA
GAGACAAGCA CAGTAGCTAC GCAAACAGAA GCGCCGGCTG TTGAAGAAAC TCAAGCACAG
GAGCCCGGAA AGCTAGCGCC ATCTGAAGAG CAACCAGCAT CTAATCAAGA AAAGCAAGAC
ACCGCGAACC TTGACGTTGA AGCGGTTCAA GACGAACTTC AGTTTGATGT AGAGCCTTCA
GCGGGTAAGA AGCCTTTAGC GGAAGAACAG CCTTCAGCGG AAGAACAACC TTCAGCAGAA
GAGACTCCTG TAGGAGGCAA TACAACTTCA GCTGATGAGA ACTCTGTCGC TAAAGCAGCC
CCTCTTTCAC AAGAAGAGGC GGTTGCAAAA GCGCAGGCTT CCACCGAGAG CAGCACCTCA
TCTGATGAAT TAGCGTCTGA AGAGGCTGCC CCTTCTGAAG TGAAAGCGAC GTCTGACAAC
GCGTCAGAAC AAGCCGCAGA GGAAAGCGCT TCAGCATCGC CAGAGCAGGT TGAAATCAAC
CTTGCAGAAA CAACCGAAGC AGCAGTAGAA ACTAAAGCGA ACGCACCGGT AGCGAAAGCG
CCTGCTAAGC AACAGGTTTC AGAAACGTCA AGCTTAGCTG CAAGCGGTAA GGGTAAGCGC
GGCGCATCTC ATCCGATGGC GCTACCTGCT GAAGTTAACG ACGCCTTTGT AGATCTTGCG
TTAACGGCTA AAGCCGATAA CGAACGTCCA GCGCTGGCCG TTTCGGGTAA AACAGCCGCA
ATGGCTCAGG CAGGCTCTCG AGCATCAGCG CCAACAACAC TACCTAAGTC GGTTGACGCT
AACGCAGAAC CAAACGCCGA CGCAGTAGCG CAATAG
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| Protein sequence | MLINATQQEE LRVALVDGQR LYDLDIESPG HEQKKANIYK GKITRVEPSL EAAFVDYGAE
RHGFLPLKEI ARTYFPKGYK FEGRPNIKDV IKEGQEVIIQ IDKEERGQKG AALTTFLSLA
GSYLVLMPNN PRAGGISRRI EGDERTELKE SLSKLDLPDG MGLIVRTAGV GKSYEELEWD
LKVLLKHWEA ISEVAEGREA PFLIHQESNV IVRAIRDYLR RDIGEILIDK TSIYEQALQH
IQLVRPDFAS RVKLYRGEVP LFSHYQIESQ IESAFQREVR LPSGGSIVID PTEALTSIDI
NSARATKGGD IEETALNTNL EAADEIARQL RLRDLGGLVV IDFIDMTPVR HQREVENRMK
DAVRSDRARV QLGRISRFGL LEMSRQRLRP SLGESAHHVC PRCSGHGTIR GTESLALSIL
RILEEESIKE NTGQIEAQLP VPVATYLLNE KRKSIQLLEK RHGVDLLLIP NANLDTPHYQ
VLRRRPDDVV SEASYDVELM PAVEAETETT TTTPVKREEP ALKGLVAPTA APVVAPKEEP
AKKAEDVPSL FARIGKWISD LFGSEGEEES NKDKKQQSTD TNKNRNNRSR NNDDRRRKPR
NKNQRRNNSS QNRDQNKDQG RDEQQDNRKA RGDQRQDQRQ DQDDKRNNKG RKPRKAQQPR
DEQQKPKHEK QEGEQQENQA QKKREVAERR KRRDKRRSVR VKKDDNTPSI VEQTEAQAVP
AQKGNEAVKA PQQDAKAQSK PKADAKPQKA VKADEVEAQS GNTAAQKQET KKPAKKPVDK
ASEEKSAREA DKVEGSQTDS ADATEANSEE NGQKREGRGR SRRSPRHVRA AGQRRKKESQ
QVDEAETQAK QPGELEPQEP ETSTVATQTE APAVEETQAQ EPGKLAPSEE QPASNQEKQD
TANLDVEAVQ DELQFDVEPS AGKKPLAEEQ PSAEEQPSAE ETPVGGNTTS ADENSVAKAA
PLSQEEAVAK AQASTESSTS SDELASEEAA PSEVKATSDN ASEQAAEESA SASPEQVEIN
LAETTEAAVE TKANAPVAKA PAKQQVSETS SLAASGKGKR GASHPMALPA EVNDAFVDLA
LTAKADNERP ALAVSGKTAA MAQAGSRASA PTTLPKSVDA NAEPNADAVA Q
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