| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02325 |
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| Symbol | |
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| ID | 6778942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 2511105 |
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| End bp | 2513954 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 642755764 |
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| Product | GGDEF domain protein |
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| Protein accession | YP_002126615 |
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| Protein GI | 196157126 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAGCG GTATCAGTCA CGTGACCGTT TCCGACATAG CAGAAGATAA GTATGGCTTT
CTATGGCTTG CCTCTCAATC AGGTATCGAC AAGTTTGATG GCTATACGTT TAGAAACTTC
GGAATGTGGG GAGAAGACAA GTCGAAGGGT CTTCAAACAC TTACCGCACT ACAAATTGAA
GCTAGTTTAG ACGGCCAACA CATGTGGGTG GGTACATTTA GCGGGCTTAG TCGTTTAAAT
GTCGACACCG AGCGGTTTGA ACACTACACC TTACCCACTG CTTCCCCATT CAATAAACAG
GTCATTAATC GAATTAAAAC GACGCACGAT GGGAAGCTCT GGATAGTCTC TGAACGCAAT
CTATACGCGT ATCACGAAGA GACAAACAGT ATAGAGCTTA TAAGCTATCT ACCCGATACA
ACCAGCACGC TAACTGATGT TGAACTGATT GGAAACACGC TTTACGTGAC CTCAACCTCT
GGCCTGTATA AACTCGATTT AATTAAGCAA ACGTTGGAGT TGGTGGCGTT TGAAGGCGTT
AACTTTACCC GCCTAGTAGC GGCGCAGCGC TCGCGGTTTT GGCTTGGTAC GGCAACACAC
GGCATCTGCC TGTTTGATCC AAACGCTAAA TCAGAGCCGA TTACAAGACT GTGTACGTCT
GAAGTTCATG GTTTATCTGA CAATTACGTC TCTGATATTT TACTTCGCCG CAATGGTGAC
CTATGGGTAA CGACTGAGCG AGGGATAAAC ATACTGACGG CGCACAGTCC GTACACTGTA
TTGCGGTTTC CAATTAGTAA AAAAGATTCG GCGAATGAGC GGTTTTCAAG CCTCTATCAA
ACGCAATCAG GCCTTGTTGT TGTGGGGACT AAAGACAACG GTTTCGCGAT AAGCAATCCC
GAGCTAAGCA ACTTTTACTC AAGCGAGGTC GGCGATGGCC GAATTGTCGG TTCAATGGCT
CACTATAAAG ACAATAAAGT ATGGCTTACC AACGAAAAAG GGCTATGGCT TTATGATGCT
GTCGATAAAA CGCACCAAGG CCCTTTTACA TCTAGCGGCG CACAAGTTAG CGATGACAAA
GCCAACGATA AGCTAACGAG CCTTGTTTAC GACAAAAAGA CTGAAACGTT ATGGGTGTCT
ATGCGTAGCG GCCTAGCGAA ATTCAATAAT GAAACTAATC AATTGGATAT CGTGGCTTTG
CAAGGAAAGT CTGGCTACAG CATAAATATT GATGCAGACG GTGATATCTG GTTTGGCGGC
TATAGCGACG GCGTATTTGT TTACCGCCCT TCGGAGAGGC GAGTAATTAA GCAATGGCCC
TTATCACTTA CCACCCGTAT TCTGTTCGAA AACGAAGAAA GTGCGTGGCT GAGTACAGTA
TCGGGTTTGT ATGTCGCTAA CAAATTAACC GGCGAACTTA TTAACGTTAG CCAATACACA
GACAAAATCA CTGACAGAAC AGTCGTCACT TGGATATCTC GCTCAAAACG CGGGGGTTAC
TGGGTCGGCA CCCAAGCGGC TGGGCTTTAT TTTATAACCA AAGATGGAGA CGATCTGTCG
TCACTCAAAG TAACACAGAT TAAGCCCGAA AGCAGACTTA GCAATATCTC AATCGGCGCT
ATTGTGGAAG ATAACGAGTA TGGTCTATGG ATTTCTACAA TTGAAGGAAT TACTTACCTC
GCCCCTGACC TTTCCTCACT GAGTTATTAC GGTGCAGAGC ACGGTGCGAT ATCCACTGGC
TACTATATAG GCTCAGTCGC TTCTACCGAT AACAATACTA TTCTTTTTGG CGGTTCAGAA
GGTGTCACGC AGTTTACCCC ATCACAAGTC ACTAACTTAA AGTGGACACC GGGCGTTCAC
CTTACTAACG TTAAAGTAGT TAGTCGAAAT AATAGCAATA GCACTACAGC AGAAAGACGT
CTGAATTTAG GTGGAAAAAT CGCACTTAAC GATAATAATA TTGCACTTTC TATCGAGTTT
GCAGCAACAG ACTTCATGAA CGCCAACGAA CTTCGCTATG CTTATAAGCT CGTTGATTTT
GAGAGTAGCT GGCGTATTAC TGACGCCAAA ACAAGAGTGG CAACTTACAC GAACTTAAAC
CCAGGACACT ACCGCTTCAC CGTAAAAGCC ATCAATAAAG AAAACGAATG GAGCAGTGAC
GAGGCTCAAC TTGAAGTAAT CATCATTCCC CCATGGTGGG ATAAACCTAT TTGGCGCGTG
GTAATCGTAC TTATTATACT TCTCCTCATT ACCTCAATCG TTTGGTTTAG AATCGCGTCG
CTAAAAAAAC GTTCTGCAGA ACTGGCGTTG AAGGTAGAAG AAAAAACAAA AGATCTAGAG
GAAGTCGTAG AAAAGCTAAC ACGCTTATCT ACACAGGACT CATTGACTGG ATTGAAAAAC
CGTCGGTATT TTACGCAAAG AGCAAAAGCT GAATGGCAAG AATTCCAGCG CCACGGACAC
ACTTTCTCGC TGCTTCTTTT AGATATTGAT TATTTCAAGC GCATAAATGA CGAGTACGGC
CACCAAACTG GTGACTCGGT GCTTGTCAAA ATAGCTAAAA TCTTGCAAAG CAGCCTTCGT
GAAAGCGATG TTATCGCTCG CTGGGGTGGC GAAGAATTCC TTATTCTACT TCCCTCTTTA
AAAGAGCAAG AAGCCTATTG GGTTGCCGAG AAATTACGCA AGGCGGTGGC TAGTCTAGTT
ATTGACTCTC CTCCTTATCA ACTTAATGTA ACCATTACCT GCGGCGTCGC TGACATTAAA
AATTACGATA GCATTGAAGC TTGTATTCAT GCAGTTGATA AAAAACTGTA TAAGGGCAAA
GAAGCCGGTA GAAATGCAGT CGTTAGATAG
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| Protein sequence | MESGISHVTV SDIAEDKYGF LWLASQSGID KFDGYTFRNF GMWGEDKSKG LQTLTALQIE
ASLDGQHMWV GTFSGLSRLN VDTERFEHYT LPTASPFNKQ VINRIKTTHD GKLWIVSERN
LYAYHEETNS IELISYLPDT TSTLTDVELI GNTLYVTSTS GLYKLDLIKQ TLELVAFEGV
NFTRLVAAQR SRFWLGTATH GICLFDPNAK SEPITRLCTS EVHGLSDNYV SDILLRRNGD
LWVTTERGIN ILTAHSPYTV LRFPISKKDS ANERFSSLYQ TQSGLVVVGT KDNGFAISNP
ELSNFYSSEV GDGRIVGSMA HYKDNKVWLT NEKGLWLYDA VDKTHQGPFT SSGAQVSDDK
ANDKLTSLVY DKKTETLWVS MRSGLAKFNN ETNQLDIVAL QGKSGYSINI DADGDIWFGG
YSDGVFVYRP SERRVIKQWP LSLTTRILFE NEESAWLSTV SGLYVANKLT GELINVSQYT
DKITDRTVVT WISRSKRGGY WVGTQAAGLY FITKDGDDLS SLKVTQIKPE SRLSNISIGA
IVEDNEYGLW ISTIEGITYL APDLSSLSYY GAEHGAISTG YYIGSVASTD NNTILFGGSE
GVTQFTPSQV TNLKWTPGVH LTNVKVVSRN NSNSTTAERR LNLGGKIALN DNNIALSIEF
AATDFMNANE LRYAYKLVDF ESSWRITDAK TRVATYTNLN PGHYRFTVKA INKENEWSSD
EAQLEVIIIP PWWDKPIWRV VIVLIILLLI TSIVWFRIAS LKKRSAELAL KVEEKTKDLE
EVVEKLTRLS TQDSLTGLKN RRYFTQRAKA EWQEFQRHGH TFSLLLLDID YFKRINDEYG
HQTGDSVLVK IAKILQSSLR ESDVIARWGG EEFLILLPSL KEQEAYWVAE KLRKAVASLV
IDSPPYQLNV TITCGVADIK NYDSIEACIH AVDKKLYKGK EAGRNAVVR
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