| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02273 |
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| Symbol | |
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| ID | 6776332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 2439308 |
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| End bp | 2440618 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642755707 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002126563 |
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| Protein GI | 196157074 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGTAG CTAACGACGA TTTACCTAAA ATAAAGACCT CACTTAAGGG GCCCATTGTA
TCCGGCTTGA CTATCTTACT GATATTTATT GTAGGAGCTA CGGTTTGGGC GTCTTCAGCG
AAACTGGCCA GTGCTATTAT CGCAGTAGGT CAACTGAAAG TAGACTCCAA CCGTAAACAA
ATTCAACACC TTGACGGAGG CATTGTTAAC GAAATAATAG TTTCTGACGG ACAGAGAGTG
AAAAAGGGCG ATACATTGGT AATTTTAGAT CCCGTTCAAG CCAAGTCTTC ATTAGGAATT
GTCGCGGGGG CACTGTTCAC AGCAGAGTTG AAACGTAGTC GTTTACAAGC GGAGAGAGAC
AATACTGACC AGCCCGATTT CACGCGGTTT TTGCATAGAG AGCATGAAGA TAAAAATAGC
CTGATTGACG CTCAGCAATC CTTATTTTCG ATTCGGCGTT CTGTGCAAGT ATCCCAACAA
GAAATTCTGC ATCAACAAAT TGAAAACCTC AAATCACAAA TATTGGGGTT TGAAAGTCAA
CAAGCCTCTA CTCAAACCCA AATAGAAATA AGTAAGGACG AACTGGTAAA TCTTAGAAAC
CTAAAAGCTA GAGGGTTAGT AGGAAATGAG CGTCTGCTTG AGCTAGAAAG GAATTTGGCC
CAACTAGAGG GTAGGGCAGG CGAACTTGTT TCGTCCATTG CCAGTGCGAA AGCGAGTATT
GATGAAAAGC GCTTAGAGCT TATCCGAGTG AAGCGCAGTT TCCATGAGCA GGTGCTAGCT
GAACTGCAAG ACGTTGAATC TGAGATTATT GATTTGCAAG AGCGCGCAAA CGCTGCAACG
CACCACCTGC AACAAATGGT CGTTAAAGCC CCTGTCGACG GTTTAATTGT AGGGCTAAAT
GTCCATACAT TAGGAGGCGT CGTTGTACCC GGGCAATTGC TTATGGAGAT TGTGCCAGAT
AACGATGCGC TTATAGTAGA AGGCCAAGTA TTGCCTACGG ATGTTGACGA CTTACGGTTT
GGTCAGAACG CACGGGTGAA ACTCTCTGGG TTACAGCAAC GGATAACACC CGAACTAACA
GGTAAACTGA TGTATGTTTC AGCAGACAGT ATTTTAGACG AACGCTCTGG TATGAACTTT
TTTATCATTC GAGTAAGTAT CGCCGCTGAA GAGCTAGCTA AACTGCCAAC TGAACAGCTT
ATTCCAGGAA TGCCTGCAGA GGTTTTTGTG CAAACAGGCG AGCGGACGGC ATTAGAGTAC
TTACTGCAAC CTCTGTCCGA CACTATTGAT CGAGCTTGGC GTGAAAAATA A
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| Protein sequence | MNVANDDLPK IKTSLKGPIV SGLTILLIFI VGATVWASSA KLASAIIAVG QLKVDSNRKQ
IQHLDGGIVN EIIVSDGQRV KKGDTLVILD PVQAKSSLGI VAGALFTAEL KRSRLQAERD
NTDQPDFTRF LHREHEDKNS LIDAQQSLFS IRRSVQVSQQ EILHQQIENL KSQILGFESQ
QASTQTQIEI SKDELVNLRN LKARGLVGNE RLLELERNLA QLEGRAGELV SSIASAKASI
DEKRLELIRV KRSFHEQVLA ELQDVESEII DLQERANAAT HHLQQMVVKA PVDGLIVGLN
VHTLGGVVVP GQLLMEIVPD NDALIVEGQV LPTDVDDLRF GQNARVKLSG LQQRITPELT
GKLMYVSADS ILDERSGMNF FIIRVSIAAE ELAKLPTEQL IPGMPAEVFV QTGERTALEY
LLQPLSDTID RAWREK
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