| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02138 |
|---|
| Symbol | |
|---|
| ID | 6776034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 2305810 |
|---|
| End bp | 2306373 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642755576 |
|---|
| Product | glycine cleavage system transcriptional repressor |
|---|
| Protein accession | YP_002126432 |
|---|
| Protein GI | 196156943 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2716] Glycine cleavage system regulatory protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.11679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAAC ACCAACTTAT CGTGACCATA CTAGGTACAG ACAACAGTGG CATATTGAGC
GAAATTGCCA CCACGGTATC TGAAGCCCAG TGCAATATTC TTGATAGTAG GCAAGCCATC
TATGGCAAGG AGTTTTCTTT GACCATGATC ATTGAAGGTA CGCAAAGCGC TATAACAAAG
GCAGAGTGCA TTTTACCCGC TTTGTTTCAA CGTCTAGATT TATTATCCAT GATGAAACGC
ACGAGCCATC ATGAAAAGCA AAATCTTGCC CACCTTTTTA ATGTCGAATT CAGTGGCGAA
GACGCCGCTG GGTTGATTAA AGCGGTAACG GGCTTTTTTG CAGAGCGGCA AGCTATGTTA
AGTGCATTCA GGCAGCGTAC GTATAAAGAT AAAGCCACGG GCAAAGACAA CATGCAGTGT
AAATTCGTTG TTTCGCTTCC GCCGAATGAA AATGTAGATG ACTTAGAATC TGATCTAATG
GCCCTGTTCA CTTCGTTAAA TGTGACAGGT AAAGTACAAG ACACACAAAA AAAGGATCCC
AATGAAAACG TTACAAGCTG GTGA
|
|---|
| Protein sequence | MPKHQLIVTI LGTDNSGILS EIATTVSEAQ CNILDSRQAI YGKEFSLTMI IEGTQSAITK
AECILPALFQ RLDLLSMMKR TSHHEKQNLA HLFNVEFSGE DAAGLIKAVT GFFAERQAML
SAFRQRTYKD KATGKDNMQC KFVVSLPPNE NVDDLESDLM ALFTSLNVTG KVQDTQKKDP
NENVTSW
|
|---|
| |