| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02131 |
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| Symbol | |
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| ID | 6779075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 2299263 |
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| End bp | 2301647 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 642755569 |
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| Product | GGDEF domain-containing PAS signal transduction protein |
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| Protein accession | YP_002126425 |
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| Protein GI | 196156936 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGTGT CGAGTAAAGA AAACGTATTA GTGTTAAAAG GAAAGCAAAC TTTGGGTCTA
TCTAATGTCA TATCTAATGA GCCTGAGAGG ATAGCGACGC TCAAGCGATT GGGTCTGCTG
GATACGCCGA AGGATGAGCG CTTCGATAGA ATTACACGCT TAGCTAGCAG TGTATTTAAC
TGTCGTTATT CTTCAATTAC GCTAATTGAC GCGGACAGAC AGTGGTTTAA GTCTGCTGTA
AATCTTGAGT TGAGTGAATC GGGTAGAGAA GTCGCGTTTT GCAACCATAC TATCTCGCAA
GACGACGCAT TAATTATCCC AGATACGAAA AAAGATCCGC GCTTTGAACA AAACCCGTTT
GTTATTGGTG AACCTTATGT TCGCTTTTAC GCAGGTGTAA GCCTTGTTGT GGACGGTCAG
GCAGTAGGGG CTTTGTGTGT ATTTGATTCA GAGCCACGTA TTTTTTCCGC AGACGAAATA
TTCCAATTAA AAAGTTTAGC GGAGATGGCG CAATCCGAAC TATGTAAAAA AGAATACTCA
GCGCTGTCGG AGCAACTTGA AGAGTATCAA ACTCGGTTGG CACAAACGCA GAAAATTACG
AATGTAAGAA GCGCTATATT AGAAAAGGTC GTTAATGCTG AATCGTTACA CAGCGTACTG
TTTGACATCG TAAATGCTAT TGAATCTGAG TATCCAGAAA AAATTTGCAG CATTTTGCTT
CTTGAAGATG GGAAGCTCAC GAAAGGCGCG GCACCTTCAT TGCCTGATTT TTATAACGAT
GCCATAGATG GTGTAGAAAT TGGTGAGGGC GTTGGAGCAT GTGGTAACAC GGCGGCCACT
AACGCGCCAA CCATCGTAGA AGACATTAGC ACCCATACCT TTTGGCATGA CTATAAAGAG
ATAGCGGCTC GGGCTGGTGT AGCCGCCTGT TGGTCTCAGC CCATTAGAGG TGCCAGCACA
GAGGTAATAG GTACATTCGC TATTTATCAT CGCTATAAAG CTGTACCCAC CCCTGAAGAA
GTCGTGCTGA TTGAACAATT TGCACATATA GCCAGTATTG CTATTGAACG GGAGCGTGCT
AGCGAGCTTA TCTGGAAGCA AGCAAACTTC GACACGCTTA CGGGCTTACC TAACCGAAAC
CTGATGCTCG ACCACCTCCA GTTAGCTTTA AAAACAGCGG ATAGGGAAGG TGACAGAGTG
GCAGTCGCTT TTCTCGATTT AGATAATTTT AAGGATATTA ATGACACGCT CGGTCATGAT
GTAGGAGATC AGCTTCTTAT TGAATGCGCT GAGCGAATAA AGCAATGTTT AAGAGCCAAT
GATACCGTTT CCCGGCTAGG TGGAGATGAG TTTGTGGTTA TTCTAAACAG TATAGAAACC
CTGAGTTCTA TCGACATTGT TGTACAGAAA ATTCTAGACG TTATTTTAAA GCCATACCTA
ATAAATGTTG AGCGAGTACA TACCAGCGCA AGTTTAGGCG TTACGCTATA CCCCGACGAC
GCTCGTGACA TAAAAGGGCT GTTAAAAAAC GCGGATCAAG CAATGTACGG GGCTAAAGAT
CTCGGTAAGA ATAGTTATAA ATACTATACT CAAGACATGC AAGCGGTTGC CGTCAAGCGC
ATAACCTTGC TGAACGACCT TCGTTATGCA ATTCAAAACG ATGAGTTATT CATTGAGTAT
CAGCCTATCA CGTCTTTTAA AGACGGTAAG GCAATCAAAG CAGAAGCGTT ACTTAGGTGG
CAGCATCCAG AGAAGGGGCG TATTGCGCCA GATGAATTTA TTCCCTTAGC GGAAGAGTCG
GGCTTAATCA TCGAAATCAG CAATTGGGTG TTCGAAGAAG TATGTAAAAA TGTGAAGCGC
TGGCAAACTC ACTATTGTCG TGAATTACAG ATATGTATTA ATACTTCGCC CAGTCAATAT
TTTCAGCAAG AAACGAGTAT CACTGATTGG CTCACTCGCT TATTGGATGA AAACATTGCG
GCACGGTCAA TTTTGCTCGA AGTGACAGAA AACCTTCTGA TGGAAGCAGA TACAAATGTT
TCTAAAAAGT TATTTCAATT TAGACAAGCG GGTGTAGATA TAGCACTTGA TGACTTTGGT
ACGGGCTACT CGTCGATATC GTATTTGAAA AAGTTGCCTA CCGACTACTT AAAAATTGAT
AAAAGCTTTG TGAAAACGAT GACCGACGTT AGTAACGATA AAGTGCTGTG TGAAGCCATT
ATCGTTATGG CGAAAAAGCT CGGTATCAAA GTGGTTGCTG AAGGTGTCGA AACCCAAGAG
CAATATGACA TACTCAATAA TATGGGCTGT GACTTTGGTC AAGGTTACTT TATTGCTAGG
CCGATGAGTA AAACAAATTT TGAAGCTTTT CTGAAAGCTC ACTAG
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| Protein sequence | MAVSSKENVL VLKGKQTLGL SNVISNEPER IATLKRLGLL DTPKDERFDR ITRLASSVFN
CRYSSITLID ADRQWFKSAV NLELSESGRE VAFCNHTISQ DDALIIPDTK KDPRFEQNPF
VIGEPYVRFY AGVSLVVDGQ AVGALCVFDS EPRIFSADEI FQLKSLAEMA QSELCKKEYS
ALSEQLEEYQ TRLAQTQKIT NVRSAILEKV VNAESLHSVL FDIVNAIESE YPEKICSILL
LEDGKLTKGA APSLPDFYND AIDGVEIGEG VGACGNTAAT NAPTIVEDIS THTFWHDYKE
IAARAGVAAC WSQPIRGAST EVIGTFAIYH RYKAVPTPEE VVLIEQFAHI ASIAIERERA
SELIWKQANF DTLTGLPNRN LMLDHLQLAL KTADREGDRV AVAFLDLDNF KDINDTLGHD
VGDQLLIECA ERIKQCLRAN DTVSRLGGDE FVVILNSIET LSSIDIVVQK ILDVILKPYL
INVERVHTSA SLGVTLYPDD ARDIKGLLKN ADQAMYGAKD LGKNSYKYYT QDMQAVAVKR
ITLLNDLRYA IQNDELFIEY QPITSFKDGK AIKAEALLRW QHPEKGRIAP DEFIPLAEES
GLIIEISNWV FEEVCKNVKR WQTHYCRELQ ICINTSPSQY FQQETSITDW LTRLLDENIA
ARSILLEVTE NLLMEADTNV SKKLFQFRQA GVDIALDDFG TGYSSISYLK KLPTDYLKID
KSFVKTMTDV SNDKVLCEAI IVMAKKLGIK VVAEGVETQE QYDILNNMGC DFGQGYFIAR
PMSKTNFEAF LKAH
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