| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02045 |
|---|
| Symbol | |
|---|
| ID | 6775470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 2217474 |
|---|
| End bp | 2218748 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 642755480 |
|---|
| Product | Site-specific recombinase XerD-like protein |
|---|
| Protein accession | YP_002126341 |
|---|
| Protein GI | 196156852 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.317068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACT ATTTAAATCA ATACGTTACA AAATTATTTA TAATAGATAC AATCTTATTG
AACGCGCTAC ATGCAGGCCA ATTCATGTCA TCTAAGCAAA AGATAACACA TTTACACCCC
CATAAAGTGA AGCGGCAAGC GACAAGTGAT TCATTGGAAT ATAGCAATAA TAGCAGCCAC
GCTTCCGGTT ATTACGATTC TGGTAGTGGC TCCACTAAAG GAGGTGTCAA TTCGCAACTC
GTTTCGCCTT CACGTTCTTC ATCTACGCAT GATGTTGAAA GTTACTACCG AGAAATTTTT
ACTAAGTTAC CGTACAACAC GCAACGTGCG TATATTAGTG ACTACAACGA ATTCGCAATT
TTTTGTAAGC AGGCTAATCT GCAAGGCTTC ACCGACGATT TTAGCCACAA TGAATTATGT
ATAAAGCAAT ATGTAGAAGA ATTGTGTCGT TCTCCCCTCG CCTACAGAAC GATTAAACGT
CGTCTGTCTG CGCTCAGTAA ATTTTTAGGT GTTGCTAAAT TGCCTAACCC CATCATCCGT
TCTGCCTATT TAAGAGATTT TATAAGACTG TCTCTTATTG AAAATAGAAA GTATCGTTTG
ACACACAAAC AGGCTGTTCC GCTTACCATT GAAATGGTTG AACAAATAAA TAACGCTATT
ATTCCCGACT CTTTGTTAGA ACTAAGAGAT ATTGCCATTA TTAACCTTAT GTTCGATGCC
TTACTGCGTG CAGACGAATT AGTAAGAGTT TGTGTAGAAG ATATTTCTGC CAGGAATAAT
ACATTGCTTG TGGTTTCTTC TAAGAGTGAT CAATCTGGAC AAGGTCAATA TAGGTATGTT
TCCTCCAGTA CGGTTTCTAT GATCCAAGAG TATATAAATG AAGCAAATAC TTGCCCTAAA
ACCAAACAAA CCCGACATGT TTCAGATTTA CGTGGGCTAC ACAAAGGCAT ACTTTTTCGA
CGATTGACGA ATCATAAAAC GGCACTATTG CCCTTTGACG AACAAATACC AAGTCATAAA
GCAAACGTTC TTAATTACTC AAGTGTCTAT CGTATTTGGC GACGCATTGC CCATCGTGCT
GGAATTTCCG AAAATATTAC GCCACACAGT GGTCGCGTTG GCGGCGCAGT ATCGCTTGCA
GAAGATGGCG CATCTTTACC CGAACTGCAG CTTGCCGGGG GCTGGCAATC TCCAGAAATG
CCGGGGCATT ATACTAAACA AGCGAATGTA AAACGGGGCG GCATGGCGAA ATTGTCCGCC
AAACGCAATC GATAA
|
|---|
| Protein sequence | MNNYLNQYVT KLFIIDTILL NALHAGQFMS SKQKITHLHP HKVKRQATSD SLEYSNNSSH
ASGYYDSGSG STKGGVNSQL VSPSRSSSTH DVESYYREIF TKLPYNTQRA YISDYNEFAI
FCKQANLQGF TDDFSHNELC IKQYVEELCR SPLAYRTIKR RLSALSKFLG VAKLPNPIIR
SAYLRDFIRL SLIENRKYRL THKQAVPLTI EMVEQINNAI IPDSLLELRD IAIINLMFDA
LLRADELVRV CVEDISARNN TLLVVSSKSD QSGQGQYRYV SSSTVSMIQE YINEANTCPK
TKQTRHVSDL RGLHKGILFR RLTNHKTALL PFDEQIPSHK ANVLNYSSVY RIWRRIAHRA
GISENITPHS GRVGGAVSLA EDGASLPELQ LAGGWQSPEM PGHYTKQANV KRGGMAKLSA
KRNR
|
|---|
| |