| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02033 |
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| Symbol | |
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| ID | 6775728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 2201509 |
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| End bp | 2202816 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642755468 |
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| Product | Secretion protein HlyD |
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| Protein accession | YP_002126329 |
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| Protein GI | 196156840 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.31595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAAA CAGTATTAGC AGTTTTCATC GCCTCATATG TCGGCGCTGC ACCAAGTTTC
GCACAAGAGT CTGATCAAAA GCATGCTCAC AATGAAACGG TAACAAGAAT TGATAAAAGC
ATACAAGATA AGCATGACGA ACATACTGAT GATGGTCATG AAGAACATGA ACTACAAGAT
GGTCAAAAGC ATGATGAGCA CGGAGGCGAG GGGGCCGATG AACATGATGA TCACGAAAGC
GAACATGCTC ATGATAAAGG TGAAAGCGAG AATAAAGACG ATGAAGAGCA TGATGAATCT
GCTTCTGCAT CGCTAGACTC CAATCAAATG GCATTAGCCA ACATTAAAGT AAGCACACTA
AGCCCCAAAA TTGTCAATTA TACTTTGTAT GCACCGGGTG AAATATTATC AAACGGCTAT
AGCAGTTATC GAGTATCACC CAGAGTGGCA TCCGTTGTCA CGCGTCGTCA TGTGGCATTG
GGAGACAGGG TAAATAAAGG CCAAGTGCTT GTCACGCTTT TTAGCGAAAC CGTTGCGCAA
GCACAAGCCA ATTACCGAAC AACATATCCA GAATGGGAAA GAGTAAAAGG ACTTGGTCGA
AAAACTGTTG GAGAGCAGCG CTACATTGAT GCAAAAGCTA ATTTTGAAGC GGCTAGTGCA
GTATTAATCT CATATGGTTT ATCCGATGCA GATTTGAAAA CGCTCACCTC ACAGCAATCA
ATAGCATTAG GAGAATATAG CTTACGTGCT GAAATTGATG GCGCGGTACT CAGTGACTCG
TTTGAACAAG GTCAGCGTAT TGATGCGGGA GAACCGTTGA TCTCGTTGGC AGATGAAAGT
GAACTTTGGG TAGAAGCGCA TCTACCATCG AATATTAACC TGCGGCTAGG AGCAGGTTCT
CCGGCACAAA TCAAAGTGGG AGACTTCACA GTTGATGCAA CAGTTACACA AGAGGCACAT
ACCATTGACC CTGTTACTCG AACGAGAACG GTTCGGCTAT TAGTGAGCAA CCCTGAACAT
CGTTTGCATC CAGGCCAATT TGCCGAGGTG TATTTCCGTT TTCTGACTAA AATGCCGGTA
ATGGCTGTTT CAGAGAGTGC GCTAATGCGT GGTCCTGATG GAGACTGGAC GGTATTTGTA
GAAGATCATC CTGGCGAGTT TTTACCCGTC GAAGTTGAAC TTGGAAGAGC GCTTGGTGGC
TTGCGTGAAA TTACCGGTGT AGAGCCGGGT TCACGCGTAG TAAGCGAGGG TGCTTTTTTT
GTGGCATCAC AAATCGCTAA AGGCGGTTTT GACCCACACA ACCACTAA
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| Protein sequence | MNKTVLAVFI ASYVGAAPSF AQESDQKHAH NETVTRIDKS IQDKHDEHTD DGHEEHELQD
GQKHDEHGGE GADEHDDHES EHAHDKGESE NKDDEEHDES ASASLDSNQM ALANIKVSTL
SPKIVNYTLY APGEILSNGY SSYRVSPRVA SVVTRRHVAL GDRVNKGQVL VTLFSETVAQ
AQANYRTTYP EWERVKGLGR KTVGEQRYID AKANFEAASA VLISYGLSDA DLKTLTSQQS
IALGEYSLRA EIDGAVLSDS FEQGQRIDAG EPLISLADES ELWVEAHLPS NINLRLGAGS
PAQIKVGDFT VDATVTQEAH TIDPVTRTRT VRLLVSNPEH RLHPGQFAEV YFRFLTKMPV
MAVSESALMR GPDGDWTVFV EDHPGEFLPV EVELGRALGG LREITGVEPG SRVVSEGAFF
VASQIAKGGF DPHNH
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