Gene MADE_01901 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_01901 
Symbol 
ID6776330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand- 
Start bp2048620 
End bp2049645 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content44% 
IMG OID642755337 
ProductD-lactate dehydrogenase 
Protein accessionYP_002126199 
Protein GI196156710 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0277835 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCAGA ACAAAATTGA AACTGACAGT GAAAGTAGCA GAAAAGTTGT GTTTTTCAGC 
ACCCGCCCGT ATGAAAAAAA CGTTTTCACT GCCTTACTTT GTGAACGCAA TAAATCGCTG 
CCCCCCCGTA TAGAAGCCAC TTTCTTTGAA CACCCTTTAA ACCCTTCAAC GGCGGCAAGT 
TGTAAAGGGT TTTCTGACGT CGTGGTATTT GTTAATGATA ACGTAAATGC AGAAACAATT 
GACGCACTTA AGCACGCCGA CGTAGAGCAC ATTGCACTTC GCTGTGCAGG CTTTAACAAC 
GTTGACGTTA ATGCTGCTAC CCGAGCAGGC ATTTCGGTAA GCCGTGTACC TGCATACAGC 
CCTGAAACCG TTGCCGAGCA TACCCTTGCC CTTATACTGA CATTAAACCG TAAAACCCAT 
AAAGCGTATA ATCGCGTGAG AGAGGGTAAT TTTAACCTTG CCGGGTTGAT AGGGTTTACT 
TTACATAATA AAACGGTAGG TGTAATCGGC ACCGGCAGAA TTGGCAAGGC CGTAATACGG 
ATATTGTTAG GCTTTGGCTG TCGCGTGCTT TGTTTTGACC CTATAGAAGA CGTAAGCGTA 
AAGAAAATGG GAGCGCATTA TGTCTCTCTT GACGAACTAT TCGCAATGAG CGCGATAGTT 
ACACTTCATT GCCCACTTAA TGAACATAGT CATCACATCA TCAACGAAAG TAGCCTTGCC 
CAAATGCCCG ACGGTGTCAT GCTTATTAAC ACGTCCCGAG GGGGTTTAGT CGATAACGAT 
GCGATAATAA AGGGCCTAAA ATCAAGAAAA ATTGGATATT TAGGGCTAGA TGTATACGAA 
CGTGAATCTG AACTCTTCTT TGTCGATCAT TCCCAAGAAA TCATTCAAGA TGACGTATTT 
CAACGGTTAA CCACTTTTCC TAATGTGTTG ATAACAGGCC ACCAGGGCTT CTTCACCGAA 
GAAGCCCTAG AAGAAATTGC CAATACCACT ATCGACAACA TACTAAGCGG TAGCAATAGA 
CTTTAA
 
Protein sequence
MSQNKIETDS ESSRKVVFFS TRPYEKNVFT ALLCERNKSL PPRIEATFFE HPLNPSTAAS 
CKGFSDVVVF VNDNVNAETI DALKHADVEH IALRCAGFNN VDVNAATRAG ISVSRVPAYS 
PETVAEHTLA LILTLNRKTH KAYNRVREGN FNLAGLIGFT LHNKTVGVIG TGRIGKAVIR 
ILLGFGCRVL CFDPIEDVSV KKMGAHYVSL DELFAMSAIV TLHCPLNEHS HHIINESSLA 
QMPDGVMLIN TSRGGLVDND AIIKGLKSRK IGYLGLDVYE RESELFFVDH SQEIIQDDVF 
QRLTTFPNVL ITGHQGFFTE EALEEIANTT IDNILSGSNR L