| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01873 |
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| Symbol | sdhA |
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| ID | 6775965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 2002409 |
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| End bp | 2004181 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642755309 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_002126171 |
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| Protein GI | 196156682 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00659831 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTAC CCGTTCACGA GTTTGATGCA GTAGTAATTG GTGCCGGCGG TGCAGGTATG
CGCGCAGCAC TACAGATTTC GCAGTCTGGT AAATCTTGCG CTCTGCTTTC AAAAGTATTT
CCAACCCGTT CTCACACTGT GTCTGCACAA GGTGGTATTA CCGTAGCATT GGGTAATTCA
CACGAAGACA ACTGGGAATG GCACATGTAT GACACCGTAA AGGGGTCAGA TTATATCGGT
GACCAAGACG CTATCGAATA CATGTGTAAG ACAGGACCTG AAGCAATCAT TGAGATGGAG
AACATGGGTC TTCCTTTCTC TCGCTTCGAA AACGGTAAAA TTTACCAGCG TCCTTTTGGT
GGTCAGTCTA AGAACTTTGG TGGCGAGCAG GGTGCTCGTA CGGCAGCAGC GGCTGACCGT
ACCGGTCACG CACTTCTTCA CCTTCTTTAC CAACAAAACG TAAAGAATAA AACAAAAGTA
TTTTCTGAGT GGTACGCGCT AGATTTAGTG AAAAACCAAG ACGGTGACGT AGTAGGTTGT
ACAGCAATCG ACATCGAATC TGGCGAAGTA GTTTACTTCA AGTCGCGCGC TGTTGTACTT
GCAACGGGTG GTGCAGGGCG TATCTATGCG TCTACCACAA ACGCACACAT CAATACCGGT
GACGGTGTGG GTATGGCGCT TCGTGCAGGT GTTGCAGTTC AGGATATGGA AATGTGGCAG
TTCCACCCAA CGGGTATTGC TGGCGCAGGT ACATTGGTTA CTGAAGGTTG TCGCGGTGAA
GGTGGTTACC TACTAAACAA AGACGGCGAG CGCTTCATGG AACGTTATGC GCCAAACGCG
AAAGACCTTG CTGGTCGTGA CGTTGTTGCG CGTTCAATGA TGACAGAGAT TCGCGAAGGC
CGCGGTTGTG AAGGACCATG GGGTACACAC ATTAAGCTTA AGCTTGATCA CCTTGGTAAA
GACGTTCTTG AATCGCGTCT ACCTGGTATC CTTGAGCTAT CCCGTACGTT TGCACACGTT
GACCCAGTAA AAGAGCCAAT TCCAGTAATT CCTACTTGTC ACTATATGAT GGGTGGTATT
CCAACGAACG TTGATGGCCA ATGTCTAACG GTTGATGAAA ACGGTAACGA CAAAGTTGTT
AATGGTCTAT TTGCTTGTGG TGAGATTGCT TGTGTATCGG TACACGGCGC TAACCGCCTT
GGCGGTAACT CGCTACTTGA CCTTGTTGTA TTCGGTCGTG CGACTGGTTT ACACCTTGGT
AAGACATTAT CTGATATGGC CCCAACGCGC GACGCGTCAG AATCTGATCT TGAAGCGTCA
ATGGCTCGTT TCAATCGTTG GGAAAATTCA GAAAAAGGCA AGGGCGAAGA CCCAGTCCAA
ATTAAGAAAG ATTTGCAAGA ATGTATGCAG CTTAACTTCT CGGTATTCCG TGAAGGTGAC
GCAATGGCGG AAGGACTTAA AGAGCTTAGC GAAATTCGTG AGCGCCTCAA GAATGCTCGC
CTTGACGACA AGAGTTCAGA CTTCAATACC CAACGTATAG AGTGTTTAGA ACTTGATAAC
CTTATGGAAA CCGCGTACAG CACGGCAGTA GCAGCGAATT TCAGAACGGA AAGCCGTGGC
GCACACAGCC GCTTCGACTT CCCGGACCGA GATGATGATA ACTGGCTATG TCACAGCATT
TATGATCCGA ACACGGATAA AATGATTAAA CGTGAAGTGA ATATGGCGCC TAAGCTTAGG
GAAGCATTCC CGCCTAAAGT GCGTTCATAT TAA
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| Protein sequence | MSLPVHEFDA VVIGAGGAGM RAALQISQSG KSCALLSKVF PTRSHTVSAQ GGITVALGNS
HEDNWEWHMY DTVKGSDYIG DQDAIEYMCK TGPEAIIEME NMGLPFSRFE NGKIYQRPFG
GQSKNFGGEQ GARTAAAADR TGHALLHLLY QQNVKNKTKV FSEWYALDLV KNQDGDVVGC
TAIDIESGEV VYFKSRAVVL ATGGAGRIYA STTNAHINTG DGVGMALRAG VAVQDMEMWQ
FHPTGIAGAG TLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLAGRDVVA RSMMTEIREG
RGCEGPWGTH IKLKLDHLGK DVLESRLPGI LELSRTFAHV DPVKEPIPVI PTCHYMMGGI
PTNVDGQCLT VDENGNDKVV NGLFACGEIA CVSVHGANRL GGNSLLDLVV FGRATGLHLG
KTLSDMAPTR DASESDLEAS MARFNRWENS EKGKGEDPVQ IKKDLQECMQ LNFSVFREGD
AMAEGLKELS EIRERLKNAR LDDKSSDFNT QRIECLELDN LMETAYSTAV AANFRTESRG
AHSRFDFPDR DDDNWLCHSI YDPNTDKMIK REVNMAPKLR EAFPPKVRSY
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