Gene MADE_01851 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_01851 
Symbol 
ID6776118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp1981484 
End bp1983037 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content47% 
IMG OID642755287 
ProductDNA ligase, NAD-dependent 
Protein accessionYP_002126149 
Protein GI196156660 
COG category[L] Replication, recombination and repair 
COG ID[COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) 
TIGRFAM ID[TIGR00575] DNA ligase, NAD-dependent 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.197167 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGCGCG GAGACGCTCA CCCCGATCGC GTAGAAGTTC GCGGTGAAGT ATTCATGCCT 
CGCGAGGGCT TTGCCAAGTT AAACGAACAT CAGAAAAACG CCGGTGGTAA GGTGTTTGCC
AATCCACGGA ATGCCGCAGC GGGAAGTTTA CGTCAGCTTG ATTCAAAAAT AACCGCTAAA
CGCCCGTTGA TGTTTTATGC ATACTCGCTA GGCGTAGTAC AACCTGATAA CTTTACGCTA
CCTACCACCC ATAGCGAACG TCTCTCACAA TTAGGTAAAT GGGGGCTGCC CTTGTGCCCC
GATATTGATA CAGCTGAAGG TGGGCGAGGC TGTCTCGATT ACTATCATCA TATATTAGAA
AAGCGTGACA ACTTACCTTA CGACATAGAC GGCGTTGTCT TTAAAGTAAA CCGTATTGAT
TTACAGGCTG CGCTAGGGTT TGTAGCACGT GCGCCAAGGT GGGCAATTGC ACAAAAGTTT
CCTGCCCAAG AAGAAGTGAC TAAACTGCTT GATGTAGAGT TTCAGGTTGG CCGTACCGGT
GCAATTACCC CTGTCGCAAG GCTTGAGCCC GTTTTTGTAG GCGGTGTAAC TGTGTCAAAT
GCGACCTTGC ACAACCAAGA TGAGATTACT CGTTTAGGCG TTAAAGTGGG TGACACTGTG
GTTATCCGCC GTGCAGGTGA TGTTATTCCG CAGGTGGTAT CTGTGGTTGA TACAAAACGT
ACAGGCAGCG AAACCGACAT AGCTTTTCCC AGTCAGTGCC CTGTGTGCGG CTCACAAGTA
GAAAAGCTTG AAGATGAGGC GGTTGCCCGT TGTACGGGTG GGTTAATCTG TGCAGCGCAG
CGCAAACAAG CGCTTAAACA TTTTGCTTCT CGAAAGGCAT TTGATATTGA CGGTTTAGGG
GACAAATTGG TCGATCAGCT AGTTGATGCC GATTTAGTTC ATAGCCCTGC TGACTTCTTT
ACTCTATCAC TTGGTGATGT AGTTGGTTTA GAACGCATGG CTGAAAAATC AGCGAGTAAG
TTGTTATCCT CTCTAGAGGC ATCTAAACAA ACTACCTTAG CGAAGTTTCT ATACGCACTT
GGTATTCGAG AAGTAGGGGA AGCGACAGCA GCTAATTTAG CGGCGCACTT TGAAACCCTC
GATGCAATTC GCGACGCGTC GATAGAGGCG CTGGTTGAAG TACAGGATGT GGGCGAGATA
GTAGCAACAC ATATATTTAA CTTCTTTAAT GAGTCACACA ATACTGATGT GATTGATGCG
TTGTTAAAAG AAGGCATTAA CTGGCCTGCG ATTGAAAAAC CTGACGCGGA TAACTTACCG
CTTGAGGGTA AAACCTGTGT GATCACCGGA ACGCTTAGCG AAATGGGCCG CTCGGATGCT
AAAGCGCGCT TACAACTCTT AGGGGCTAAA GTGGCGGGTT CGGTAAGTAA AAATACCGAT
TTTCTGGTTG CTGGAGAAAA GGCAGGCTCT AAATTGACGA AGGCCCAAGA GTTAGACGTT
GAGGTGTGGG ATGAAGCCAA ACTTATTGCT TTTCTCGCAG AAAATGAGAA ATAA
 
Protein sequence
MLRGDAHPDR VEVRGEVFMP REGFAKLNEH QKNAGGKVFA NPRNAAAGSL RQLDSKITAK 
RPLMFYAYSL GVVQPDNFTL PTTHSERLSQ LGKWGLPLCP DIDTAEGGRG CLDYYHHILE
KRDNLPYDID GVVFKVNRID LQAALGFVAR APRWAIAQKF PAQEEVTKLL DVEFQVGRTG
AITPVARLEP VFVGGVTVSN ATLHNQDEIT RLGVKVGDTV VIRRAGDVIP QVVSVVDTKR
TGSETDIAFP SQCPVCGSQV EKLEDEAVAR CTGGLICAAQ RKQALKHFAS RKAFDIDGLG
DKLVDQLVDA DLVHSPADFF TLSLGDVVGL ERMAEKSASK LLSSLEASKQ TTLAKFLYAL
GIREVGEATA ANLAAHFETL DAIRDASIEA LVEVQDVGEI VATHIFNFFN ESHNTDVIDA
LLKEGINWPA IEKPDADNLP LEGKTCVITG TLSEMGRSDA KARLQLLGAK VAGSVSKNTD
FLVAGEKAGS KLTKAQELDV EVWDEAKLIA FLAENEK