Gene MADE_01706 details

Gene Information

• Locus tag: MADE_01706
• Symbol: rimM
• ID: 6775802
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 1832460
• End bp: 1832981
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 642755139
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_002126004
• Protein GI: 196156515
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0345877
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCTAG CGTCTGACAA AGTGATTGTT GGCAAAATTG GCGCACCGTA CGGTGTTAAA 
GGTTGGGTCA AAATCAACAG CTATACAGAA ACGCCAGAAG GTATTTTCGA GTATGCGCCA 
TGGTTTATTG GCGAAGAAAA AGAATACCAA ATTGACCAAT GGCGACCGCA CGGTAAAAGC 
CTCGTTGCAA AAATTGTGGG CGTTGATAGT CGAGACGATG CAGAGCGCAT CAAAAACTTG 
GATATCAACA TAAACGCTTC ACAGCTGCCT GATTTAGGTG ACGAAGGGGT TTATTGGCGT 
GAGCTCACCG GCATGAAAGT GGTAACAACG CAAGGTTACG ACTTAGGTGT GGTGAAAGAA 
GTGTTTAATA CAGGTGCTAA CGACGTGATT CACGTTAAAG CGAATGTAGG CGATGCTTTT 
GGTCAAAAAG AAAGACTATT ACCTTTTGTG TTCGACGAAG TCGTACAAGA GGTGGATAAG 
GAAGCGAAGG TCATTAAAGT TGACTGGGAC CCGGGGTTTT AA 

 

Protein sequence

MSLASDKVIV GKIGAPYGVK GWVKINSYTE TPEGIFEYAP WFIGEEKEYQ IDQWRPHGKS 
LVAKIVGVDS RDDAERIKNL DININASQLP DLGDEGVYWR ELTGMKVVTT QGYDLGVVKE 
VFNTGANDVI HVKANVGDAF GQKERLLPFV FDEVVQEVDK EAKVIKVDWD PGF