| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01646 |
|---|
| Symbol | |
|---|
| ID | 6779205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1768431 |
|---|
| End bp | 1768982 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642755078 |
|---|
| Product | putative nitroreductase |
|---|
| Protein accession | YP_002125944 |
|---|
| Protein GI | 196156455 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0778] Nitroreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00644737 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCTT TAACATTGTT ACTTAACAGA AGTTCTCAGC CGCGTTTAGA AGCGCCAGCA
CCAAGTGGTG ATGCACTTGA AAATATTATG CAGGCTGCTC TGCGCGCACC TGATCATGCG
TGTCTAACAC CATGGCGTTT TATTGTATGT ACGGGAAAGG GGTTAGATAA GCTAGGTGCA
TTGTATGAAA AGTCGGCTAT CGAAAACGGT AAGCCACAAA AAGACATAGA AAGGGCAGTG
CAGCTTCCGC ATCGCGCGCC CATGGTCGTT GTTGCAATTG CAAAGCATAT TGAACATGAA
AAAGTGCCAA GAGTTGAGCA AATCGCTTCG GCCAGCTGTG GCGTTATGGC CATGCAAATG
GCGGCAGTTG CGCAGGGCTT TAACGGTATG TGGCGCACAG GCAATTATGC GCAATGCGAA
ACGGTAAGGA ATGGTTTAGG TCTTAGCGAA GACGATGAGC TGGTTGGATT CTTGTATCTT
GGCACGCCGG CCTTCGAACC TGCGCCTAAG CCGCAGAGAA ATAGTGGCGA CTATTTCGAA
TTTTGGCAGT AA
|
|---|
| Protein sequence | MDALTLLLNR SSQPRLEAPA PSGDALENIM QAALRAPDHA CLTPWRFIVC TGKGLDKLGA
LYEKSAIENG KPQKDIERAV QLPHRAPMVV VAIAKHIEHE KVPRVEQIAS ASCGVMAMQM
AAVAQGFNGM WRTGNYAQCE TVRNGLGLSE DDELVGFLYL GTPAFEPAPK PQRNSGDYFE
FWQ
|
|---|
| |