Gene MADE_01554 details

Gene Information

• Locus tag: MADE_01554
• ID: 6775274
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 1667486
• End bp: 1669357
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 642754985
• Product: 1,4-alpha-glucan branching enzyme
• Protein accession: YP_002125852
• Protein GI: 196156363
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0296] 1,4-alpha-glucan branching enzyme
• TIGRFAM ID: [TIGR02402] malto-oligosyltrehalose trehalohydrolase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCTTGG CGGTTTTCAT TATTGGCACT TCAGTTGCAC AACTAACGGA CTCTATTAGA 
GTCGTCGCTA ATTACGCGAT GCAATCCTCT TTTTTATTCA TTCCTTCGCG TTGGAGCGCT 
AATAAAATGT GTGAGAATTC AATAGGTCCA GGTGTAGTAA AAACACAAAC TGGATATCGT 
TTTTCCGTAT GGGCGCCTAA TGCACAAAGC GTCTCACTAA CTGGAGATTT TAATGACTGG 
AATCGCCCTG GTATCAGTAT GCAGAGGCAA GATAACGGTG TGTGGTGGTG TGAAACTGAT 
GATGCTAAAT GTGGCCATGA ATACAAGTAT GACGTGACTA ATGCTAAAGG TGATAGCGTT 
TTAAAAAACG ACCCTAGGGC ACGGTTGATG ACCAATAGTG TAGGCAATAG CGTTATTTAT 
GACGATGCCT TTAGATGGGA GGTAGAAGAC TTTAAACCTG CTCCAATTCA TCAACGAATA 
ATCTATGAGC TTCATATTGG CACATTTCAC CGCAAAAACG GTGAGCAAGG TACATTTGAC 
TCGGCCATAG AGAAGCTTGA TTACTTAGCT TCGCTAGGCG TAAATATGAT AGAGCTTATG 
CCAGTAAATG AATTTGCTGG CGATATCAGT TGGGGGTACA ACCCAGCATG CCCATTTGCC 
GTTGAAGAAG CTTATGGTGG GCCAGATGGC CTAAAACGCT TTATCGACGC CGCGCATAAA 
CACGGCATAG GCGTAATAAT GGACGTTGTA TATAACCATT TCGGCCCAAG CGACTTGGAT 
ATTTGGCAGT TTGACGGCTG GAGCGAGAAC GACAAGGGGG GAATTTATTT CTACAACGAC 
GAACGCTCCG CTACCCCATG GGGAGACACG CGACCTGACT ATGGCCGTCA AGAAGTAAGA 
GATTATATTA CCGACAATGC CTTAATGTGG CTTCAAGAGT TTAAAGCAGA TGGGCTGCGT 
ATGGATATGG TGCCTTTCAT GCGTACCGTC TCTGGTGCAG ACTCAGGGGA AGATGATATT 
CCAGAAGCTT ATGAGCTAAT TAAGGGAATA AATGGGTTCA TTCAACACGC ATGCGGTGAA 
AAAATGACAA TTGCTGAAGA CCTCCACCAG CACGATTACA TTACAGATCC CTTAGACGGT 
GGAGGCTGCG GTTACACTGC GCAATGGGAC GCTGCATTTG TACACCCAGT ACGTGAAGTA 
CTAACTCAAT CTGATGATGA AAACGTCAAT CTTGATGTAC TCGTCGATGC GTTATGCAAA 
CAATACAGCG CTAGCCCCTT TGCTAGAGTT GTCTATACCG AATCTCACGA TGAAGTGGCT 
AACGGTAAAG CTCGCCTTGT CGAAGAAGTT GCGCCTGGAA ATGTAGATGA CGATTATTTT 
GCGCGTCAAA AAGGCGTGTT AGCAGCCACG CTGGTGCTTA CAAGCGCCGG TATTCCTATG 
CTGTTTCAAG GGCAAGAATT TAAAGAGACG GGGTGGTTTA ACGATACAAA AGACTTGGAT 
TGGTCACGGC GCAATAGTTT TGATGAATAC TTGGAGGCAA TCACGGAACT GGTTAACTTA 
CGTAAAGGTG AAGATAAAGC TACCACCGGG CTAACTGGCG CAAATACAGA GGTTGTTCAT 
CGAGACAGTA AAAACAAAGT CTTGGGTTAT CGCCGTTTCA ATGACATCGC CAATGAGTCG 
GTGTGGGTGT ATCTGCATCT GGGGGGCGAA GACATAGATG ATTATCAGTT ATCAGGGGTG 
CCGGTCGACC CTCATTGTTT ATTTGCATGG TCAGACGGGT TGTGTACGCA GTCTGTTCAT 
ATAAATAACA GGAAAGTAAG GCTTCCATCA TTCGGTATTT TCATTTTTAC TGAGCGGGGT 
AACCTAGGCT AA 

 

Protein sequence

MGLAVFIIGT SVAQLTDSIR VVANYAMQSS FLFIPSRWSA NKMCENSIGP GVVKTQTGYR 
FSVWAPNAQS VSLTGDFNDW NRPGISMQRQ DNGVWWCETD DAKCGHEYKY DVTNAKGDSV 
LKNDPRARLM TNSVGNSVIY DDAFRWEVED FKPAPIHQRI IYELHIGTFH RKNGEQGTFD 
SAIEKLDYLA SLGVNMIELM PVNEFAGDIS WGYNPACPFA VEEAYGGPDG LKRFIDAAHK 
HGIGVIMDVV YNHFGPSDLD IWQFDGWSEN DKGGIYFYND ERSATPWGDT RPDYGRQEVR 
DYITDNALMW LQEFKADGLR MDMVPFMRTV SGADSGEDDI PEAYELIKGI NGFIQHACGE 
KMTIAEDLHQ HDYITDPLDG GGCGYTAQWD AAFVHPVREV LTQSDDENVN LDVLVDALCK 
QYSASPFARV VYTESHDEVA NGKARLVEEV APGNVDDDYF ARQKGVLAAT LVLTSAGIPM 
LFQGQEFKET GWFNDTKDLD WSRRNSFDEY LEAITELVNL RKGEDKATTG LTGANTEVVH 
RDSKNKVLGY RRFNDIANES VWVYLHLGGE DIDDYQLSGV PVDPHCLFAW SDGLCTQSVH 
INNRKVRLPS FGIFIFTERG NLG