| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01444 |
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| Symbol | |
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| ID | 6776039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 1542239 |
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| End bp | 1545052 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 642754879 |
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| Product | TPR repeat protein |
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| Protein accession | YP_002125749 |
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| Protein GI | 196156260 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0688079 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTTT TTAATAATAA AAAGCGTGTT GTGCATCGCG CTATTATCTC TGCAGTTGCC
TCATCGTTAA TCGTATTCAA CAGTTTTGCT ACTACATCAG AAGACTATGA GAAGGCCCTC
ACCGCATTTA ATCAAAACGA GTACGATGAA GCCTATATTC ACCTTAAAAA TAGCTTACAA
AAAGACCCAG AAAACTTGGC TGCAAAGATA TTAATGGGCG AAATATTGCT TATTAATGGC
TACTTAACTG CAGCCGAAAT GGAGTTTGTA GAAGCGCTGG AAATGGGTGC TGATATCAAT
CTCCTTGCAG AACCCCTAGG CAACACCTGG CTGTTTCTTA ACAGGTACCA AGAAATTGTA
GATTTCTCTG ATTTAAACAA GCTCTCTGGT GAAGCAGAGC GCGAGTGGCT GATGATTCGT
GCAACAGCGT GCATCAGACT AGAAGACGAA CAATGTGCAT TGCGCGACTA CAACACTATT
GTGTCACGTA CGCCTAACTT TGTGCCAGCC ATAAATGGGT TAGCTTCCAT TGCCCTTCAA
AATGAAGATT TACCGAAAGC GACCTCCCTT GTCGACAAGG CTATGTCACT AGAGCCTGAG
AACGCCATAA CATGGCGCTT GAAAGGGCAA CTTTCGTACC GACAGGGTGA TACTGACGCA
GCAACGGCAC ACTTACAAAA AGCGCTGACA TTTAACCGCG ACGACCCTAT AGCGCTGCGA
AATCTAGTGG ACTTGTATTT AGAAGCGAAA GACTATGATA CGGCCAAGCT ATTCGTTGAT
GAAATTATTG AAGACACGCC AAACGATCCT TTGGCCATTT TACTTAATAG CTGGTTGCAA
AGCAGAGACA ACCAACAAGC TATCGACAAC GAAAAGCTTA AAGAGCTTAA CGACTTTATG
GCGCAGCTCG ACCCTGAGCT TATAACCTCG CAGCCTATGC TGCTTTATAT AAGCGGTCTA
ACCAACTTCT TCAACAACAA CATGGAGACT GCAGCAAAAG ATTTTAGCGC TTATCTGCAA
CAAGAGCCGG AAGATTTGCA GGCGGTATTA ATGCTGAGCC AAGTTTATAT GGCTACACAG
CAGGATAAGC AAGCGCTTGC GCTGCTTGAG CGTCATCAAG ATGCACTAAT GGAAGACCCT
GACTCAGCAT TGCTATTAGG TGATTTGTTT ATTCGTCAAA ACAAAGCATT TAAAGCTGAG
CGCCTTTTGC AAAACCTTGA ATACAAGTAC CCGAATGAAA ACAAGCTTCA GCTATTTAAA
ATCAAATTAA TGGCTGCAAG GGGTAAGCAA GCCGAAGCCT TGAGTATTCT TGAGAAGAAC
CTACCTGCTT ACAAAGATAA CGCAGGCTTT CTTTTCACTT ATTCATTGAT GAATTTACAA
GCACAGCAGT TTGAAAACGC ACTAAAAGGT GCCAACCTGC TTAGCGAACT GTTTCCCGAC
GAAGCTGAAG TGTACAACCT AAAAGCGGGC ATTTTGATTA GACAGGGTCA ATTGGCGGAA
GCTAAAGCCA ATATCGAAAA AGCGCTCGCG CAGAACCCTA CCCTCTTTCC GGCTAAATTC
AATTTGGCCG CGACAGAAAG TCGCTTAGGA AACGTGGATA CGTCTAATCA GTTAATAGAA
GAACTTCTTG AGCTGTCACC GCAGCATAAT GAAACCTTAA TGCTGAAAGC GTTCAACTTG
ACCAAAGCGG GTAATGTAGA TGAAGCGAAG CAAATTTACC TTGATATATT AACGCTTAAT
CCTTCGAATA TCGGAGCGAG AGAGCGCGTT TCATCTTTAT ATCAGCAACA AGGCGATACA
AAGAATGCAC TGTATCATTT AGACCTGCTT ATTAAAGATG ACTTTGACAA TGCTGACTAC
CTTCTTCGTA AAGCAGCGCT TCAGTTAGGG AATAACCAGC GTGCTGATGC CGAGAAAACA
CTGAGCATTG CAAGAAATTT CATAAACGAC GATGCAGGTA AGTTAATTGC CTATGCCGAC
CAAGCTCGTA GCATTGGCAA CGATGAAGAC GCTTTAGATG CTATGGCACG TGCTTATGAA
ATAGCGAATT CAAGTACTTT TGTTACGTTG CGCTACACTA GTCTGCTATT AGACCTACAA
AACAACGACA AAGCACAGTC TTTACTAACG AGCATTCCTA AAGACCAGCA GCAAAACCCG
GTCTATCATT TCTTGAAAGG TCGTTTAGAA GCAAATAAGG GCAAAAATGA TCGTGCAATC
GCGGCTTTCG AAAAAGCACT GGACGTAGAC TCTACGTTTG CTCAAGCGTT TATTGCTATA
TACAACTATG CACTGAACGA ACAGTTCGTC GATGTATTTT TGAATACTGC TCGCAAACTC
ATTGCTGAAA ATGAGAATAA CCTGCTAGCA AAAAATCTGT TGGCTCAGTA CTTATTCTTT
ATTCAAGAAT TTGACGAATC GATAGCGCTT TATAAAGCGC TTATTGAGGA GCCGAACCTT
CTCAACCCCG CCGAAGCCTA TAACCGTTTG GCTATCATGC ATATTGAAAC GTCGCTGGTT
ACGGCAAAAA ACTATGCCCG ACAAGCTTAC GAATTGCAGC CTAATTCAGC CAAAATACTG
GATACTTACG GGCATATTAA AGCGCTGCAA GGAGATTACG AAGGCAGTCT TAAAATGCTT
CGAGATGCCT TTGCCAGGGA TGCTAACGAC CCAAATATTC GCTACCACCT AGGCTATACC
CTCGCTAAAC TAAATAGAAT TGAGGAAGCG AAGAAAGAGC TAGAGTATGC AGTAAATGTA
GAGCGCCCTT TCTTTAGGCG TCCACAAGCT AGAGCATTAT TAGAGAGCCT ATAG
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| Protein sequence | MDFFNNKKRV VHRAIISAVA SSLIVFNSFA TTSEDYEKAL TAFNQNEYDE AYIHLKNSLQ
KDPENLAAKI LMGEILLING YLTAAEMEFV EALEMGADIN LLAEPLGNTW LFLNRYQEIV
DFSDLNKLSG EAEREWLMIR ATACIRLEDE QCALRDYNTI VSRTPNFVPA INGLASIALQ
NEDLPKATSL VDKAMSLEPE NAITWRLKGQ LSYRQGDTDA ATAHLQKALT FNRDDPIALR
NLVDLYLEAK DYDTAKLFVD EIIEDTPNDP LAILLNSWLQ SRDNQQAIDN EKLKELNDFM
AQLDPELITS QPMLLYISGL TNFFNNNMET AAKDFSAYLQ QEPEDLQAVL MLSQVYMATQ
QDKQALALLE RHQDALMEDP DSALLLGDLF IRQNKAFKAE RLLQNLEYKY PNENKLQLFK
IKLMAARGKQ AEALSILEKN LPAYKDNAGF LFTYSLMNLQ AQQFENALKG ANLLSELFPD
EAEVYNLKAG ILIRQGQLAE AKANIEKALA QNPTLFPAKF NLAATESRLG NVDTSNQLIE
ELLELSPQHN ETLMLKAFNL TKAGNVDEAK QIYLDILTLN PSNIGARERV SSLYQQQGDT
KNALYHLDLL IKDDFDNADY LLRKAALQLG NNQRADAEKT LSIARNFIND DAGKLIAYAD
QARSIGNDED ALDAMARAYE IANSSTFVTL RYTSLLLDLQ NNDKAQSLLT SIPKDQQQNP
VYHFLKGRLE ANKGKNDRAI AAFEKALDVD STFAQAFIAI YNYALNEQFV DVFLNTARKL
IAENENNLLA KNLLAQYLFF IQEFDESIAL YKALIEEPNL LNPAEAYNRL AIMHIETSLV
TAKNYARQAY ELQPNSAKIL DTYGHIKALQ GDYEGSLKML RDAFARDAND PNIRYHLGYT
LAKLNRIEEA KKELEYAVNV ERPFFRRPQA RALLESL
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