| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01425 |
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| Symbol | |
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| ID | 6779221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 1522722 |
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| End bp | 1524599 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642754860 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002125730 |
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| Protein GI | 196156241 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTAG ATCTCCAACA TTACCCAACG CTTGCGCTTG CGCAAACACC TGATAAGTTG
AGGCAGCTGC CTCAAGACAA ATTACGCGAG CTCGCCGATG AATTACGTGA GTACTTACTT
AATAGCGTAA GTCAAACCAG CGGGCACTTT GCCTCAGGTT TAGGCACAGT AGAGCTTACT
GTCGCACTGC ACTATGTATA CAACACCCCC TTTGACCGTT TGTTGTGGGA CGTGGGCCAT
CAAGCCTATC CACACAAAAT TTTGACCGGC CGTGCTGAGC GCATGAGTAC CATTCGCCAG
AAAAACGGTT TACATCCGTT TCCGTGGCCG CCGGAAAGTG AATACGACAC CTTTGCTGTT
GGCCACTCGT CTACATCGAT TAGCGCTGCG CTCGGCATGG CGGTAGCCGC AGAAAAGGAA
GGTAAAGACA GAAAAGTGGT ATCGGTCATT GGCGATGGCG CGATGACAGC GGGTATGGCG
TTTGAAGCAC TTAACCATGC AGGCGATATC AAAAAAGATA TGGTGGTGGT GCTCAACGAC
AACGAAATGT CTATCTCTGA GAACGTAGGT GCACTGAATA GCCACCTAGC GCGTTTGCTG
ACAGGAAACT TTTTCAACTC CATTCGCGAT GGCGGTAAAA AACTGCTTAG TAACGTACCG
CCTATTAAAG AGTTTGCCAG CCGTGCAGAA GAGCACCTTA AAGGCATGGT CGTGCCTGGT
ACTATCTTCG AAGAGCTGGG CTTTAACTAT ATAGGTCCTA TTGACGGTCA CGACGTCAAT
GCTGTTGTAG ATACCCTTCG CAACATGCGT AACTTCGATG GCCCGCAGCT GTTACACGTG
GTCACCAAAA AAGGTAAAGG CTACGCCGTT GCAGAAGAAG ACCCGATAAA ATTTCACGCA
GTGCCAAAAT TCAACCCAGC AGACAATGCA CTGCCTAAGT CTAAGCCTTC TGCACCCACC
TACTCGGCTA TTTTTGGCCA GTGGCTGTGT GATATGGCAG CACAAGACCC TAAGCTTATG
GCGGTGACGC CTGCTATGCG TGAAGGCTCA GGCATGGTTG AGTTTTCTCA GCGTTTTCCT
GAACAATACT TCGATGTTGC CATTGCCGAA CAGCATGCAG TGACCTTTGG CGCCGGTCTT
GCCAAAGACG GTATGAATGC GGTTGTTGCG ATTTATTCAT CGTTCCTTCA GCGCGCTTAC
GATCAGCTTA TCCACGATGT GGCAATTCAA GACTTACCGG TATTATTTGC CATAGACAGA
GCCGGCATAG TTGGCGCCGA TGGCCCTACT CACCAAGGCG CGTTTGATAT TGCTTTCCTT
CGCTGTATTC CAAACATGGT CGTGATGGCA CCTTCAGACG AAAACGAATG TCGTCAAATG
CTCTACACTG GTCACAAGCT TCAAAAGCCA GCGGCGGTAC GGTACCCTCG CGGGGCAGGC
ATGGGGGTTA CGCCAGATGA AGCCATGACA GCGCTTGAGA TTGGTAAATC ACGTACCTGT
CGAGAAACCG CGAAAGATAA ATCTGAAAGC GTTGCTATTT TGAACTTCGG CTGTTTATTG
CCCTATGCAC TTGAAGCAGC AGTGGCTATT GACGCTACGG TTATCGACAT GCGCTTTATC
AAGCCATTGG ATGGCGACGC TGTTTTAAAA GCAGCCAACG AACACAGCGC ACTTATAACC
TTAGAAGACG GCTGTATTAT GGGCGGTGCT GGCAGCGCTG TACTAGAGCA TTTACAGCAA
AACGGTGTAT TAAAAGCTGT GAAAATGCTT GGCTTACCGG ACAGCTTTAT CCTGCAAGGT
ACACAACAGG AAATGTACAA AGAGCACGGC TTAGATGCTG AAGGTATTAT TGCTGCGGCA
AAATCGCTAA TAGGATAA
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| Protein sequence | MSLDLQHYPT LALAQTPDKL RQLPQDKLRE LADELREYLL NSVSQTSGHF ASGLGTVELT
VALHYVYNTP FDRLLWDVGH QAYPHKILTG RAERMSTIRQ KNGLHPFPWP PESEYDTFAV
GHSSTSISAA LGMAVAAEKE GKDRKVVSVI GDGAMTAGMA FEALNHAGDI KKDMVVVLND
NEMSISENVG ALNSHLARLL TGNFFNSIRD GGKKLLSNVP PIKEFASRAE EHLKGMVVPG
TIFEELGFNY IGPIDGHDVN AVVDTLRNMR NFDGPQLLHV VTKKGKGYAV AEEDPIKFHA
VPKFNPADNA LPKSKPSAPT YSAIFGQWLC DMAAQDPKLM AVTPAMREGS GMVEFSQRFP
EQYFDVAIAE QHAVTFGAGL AKDGMNAVVA IYSSFLQRAY DQLIHDVAIQ DLPVLFAIDR
AGIVGADGPT HQGAFDIAFL RCIPNMVVMA PSDENECRQM LYTGHKLQKP AAVRYPRGAG
MGVTPDEAMT ALEIGKSRTC RETAKDKSES VAILNFGCLL PYALEAAVAI DATVIDMRFI
KPLDGDAVLK AANEHSALIT LEDGCIMGGA GSAVLEHLQQ NGVLKAVKML GLPDSFILQG
TQQEMYKEHG LDAEGIIAAA KSLIG
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