Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_01349 |
Symbol | |
ID | 6776746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 1447114 |
End bp | 1447998 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 642754786 |
Product | regulatory protein |
Protein accession | YP_002125657 |
Protein GI | 196156168 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3279] Response regulator of the LytR/AlgR family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0319179 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTAATA AAGCGTGGTT TCAAGCGCAT CAAAGCTCAA TATCCCTTTC CCTTCTGGGC CTGTATTTTT TAGTCAATGG ATTTATCAAT AGCACCACGG TACTCATGGA AGCCATGCGC ACGCCACCGC TACCTTTTGC CCAATGGGAA CCTTTTGCTT GGGAGTATAC CAGTGCCGTT GGCAGCTTCT GCGTGGTGAT AGCACTGGCA AAGATACTCA ACCATTTTCC TTGGCAATGG GAACGGTTTA CTTTTAGCAT TGCGTTATAT AGTGCTGTGG GTCTGTGCTT TGCAGCCACA CATATTATAT TTATGATTGT TAGTAGAGAA ATTATTTACG CATTAGTGGG TGGCAATTAC CAATTCGCCA CTTCTGCAGA ACAATGGTTC TTTGAACTCA TTTATGAAAT GCGAAAAGAT TTATGGTCTT TCATCTTTTT TGTAGTAATG ATTTGGTGTT ATCGCTATGT GGTAGCACAA TGGTTAGGTA ACGCCAGCAA TATCGGGCTT GAGTCAGCTA AATTAGACCA GCGCAATACA CAAAATGCTC CAGATGAAAA AGCCTTCAAG CATGAACTAT TATTGATTAA AAAAAATGGC CATGAGTTTC TAATTAATAA GCAAGATATC AACTGGTTGG CCTCTTCGGG CAATTATGTC AACTTACACA TTGACGATAA GGTTTACCCC ATGCGTACTA CGCTAACCTC ATTTCTAGAT GAAAATGCTT ACTTGCCTTT TGCACGGGTC CACCGCTCTT TTGCTGTAAA CCTTAATGAT GTTGAAAGTG TAAAGGTCGG GGACAGCGGC GATGGCGTAA TTACATTAAA AAATGGCCAT ACTGTTAAGA TGTCACGAAG GTATAAGCTG GCTATTGATA AATAA
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Protein sequence | MINKAWFQAH QSSISLSLLG LYFLVNGFIN STTVLMEAMR TPPLPFAQWE PFAWEYTSAV GSFCVVIALA KILNHFPWQW ERFTFSIALY SAVGLCFAAT HIIFMIVSRE IIYALVGGNY QFATSAEQWF FELIYEMRKD LWSFIFFVVM IWCYRYVVAQ WLGNASNIGL ESAKLDQRNT QNAPDEKAFK HELLLIKKNG HEFLINKQDI NWLASSGNYV NLHIDDKVYP MRTTLTSFLD ENAYLPFARV HRSFAVNLND VESVKVGDSG DGVITLKNGH TVKMSRRYKL AIDK
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