Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_01347 |
Symbol | secD |
ID | 6776755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 1444251 |
End bp | 1446050 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642754784 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002125655 |
Protein GI | 196156166 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.151962 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTGCAA TGTGTGCACT TTACGCACTT CCTAACATTT ACGGCGAAGA TCATGCCGTA CAAATCTCAG CAGGTCGTGA TGCTGTGGTA ACTAACGCCA CGGTAGAGCA AGTAAAGGCC GCGCTAAACG AAAAAAACAT CTCGCCGAAG CGTGTTGAGT TTGAGAACGA CCAAATTTTG GTTCGCGTTT CTGATTCAGA TACACAGCTA GTAACCCGCG AAACTTTAGA AAAGACGCTT GGTGACGACT ACTACGTGGC AATGAACCTT GCCCCAGACA CGCCGGAATG GCTAGAAGGG TTAGGTGGCG CACCGATGAA ACTTGGTCTT GACCTTCGCG GTGGTGTGCA CTTCTTGATG GAAGTGGACA TGACGGAAGT TATCACTAAG TCACTGGAAG ATGCTGAAAG CGGCTTTCGC ACCTCTCTGC GTGAAGAGGG TATTCGTTAC CGTGGTGTTA AACAAGTAGA CGACCATATC GACATTACCT TCCGCGATGA AGATACGTTA GATAAAGCGG AGTTCTTCCT GCGCAACCAA AGTCGTGACC TAACGTTTAA CCAAATTGAT GACTTAACCC TTCGCGCTAT TTTCGCGGAG AGTAAGCTTC AAGAAATTCG CGACAACGCG GTTAAGCAAA ACATCACTAT CATTCGTAAC CGTGTTAACC AGCTTGGTGT TGCTGAGCCT CTTGTTCAAA AACAAGGCGC TGACCGTATT GTTGTTCAGC TCCCCGGTAT TCAAGATACC GCTCGTGCAA AAGAAATTCT AAACGCGACG GCGACCCTAG AATTCCGCAT GGTTGATCAG AAAAACGATA TTCGCGATGC ATTGAACGGC CGTGTTCCTC CTGGTTCTCA GGTGATTGAA GATCAGCAAG GTATTCCACA GTTACTTGAA AAGCGTATTA TGCTTACTGG TAGCCACATT ATTGATGCTA ATAGCGGTGT TGATGAATAT GGTCTTCCAA ATGTAAATAT CTCGCTAGAC TCTGAAGGCG GTAACAAAAT GTCTCGCTCA ACCCGCGGCA ACATTGGTAA GCCAATGGCA ACGGTGTTTA TCGAGTACAA ATCTACCGGA GAGCGAAATG ACGACGGTAA ACTTGTGTTC GAAAAGCATG AGCAAGTTAT CTCAGTTGCC ACCATTCGTG CGCAGCTTGG TAGTAAGTTC CAAATTACCG GTCTTGATTC TCCAAAAGAA GCTCGTGATT TAGCGTTACT ACTTCGCGCG GGTGCACTTA TTGCGCCAAT TCAAATTGTT GAAGAGCGCA CCGTAGGCCC AAGCTTGGGT AAAGAAAACA TCGAGCTAGG TATGCAGGCT ATTATCTATG GCCTTGCGGC TGTGCTTGTT TTCATGTTGA TTTACTACAA AGCGTTTGGT GTGGTAGCGA ACATCGCGCT TATCACTAAC CTGGTAATGA TTGTAGGCAT CATGTCGATG ATCCCGGGCG CAACCTTAAC GCTTCCAGGT ATGGCGGGTA TTGTACTTAC CGTTGGTATG GCGGTAGATG CTAACGTGCT AATCTTTGAG CGTATTCGTG AAGAGCTTCG CGAAGGGCGC AGTCCGCAGC AAGCTATTCA CCACGGGTAC GACAGTGCAT TCTCAACCAT TTTGGATGCG AATATCACTA CTTTCATTGC TGGTTTAATT CTGTTCGCAG TTGGTACCGG CCCAATTAAA GGCTTCTCTA TTACGCTAAT GATTGGTATC GCAACTTCAA TGTTTACCGC TATTTTGGTT ACTCGCGTTA TTGTTAACGC AGTATGGGGC GGCAAACGTG TAGAGAAATT AGCGATTTAA
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Protein sequence | MVAMCALYAL PNIYGEDHAV QISAGRDAVV TNATVEQVKA ALNEKNISPK RVEFENDQIL VRVSDSDTQL VTRETLEKTL GDDYYVAMNL APDTPEWLEG LGGAPMKLGL DLRGGVHFLM EVDMTEVITK SLEDAESGFR TSLREEGIRY RGVKQVDDHI DITFRDEDTL DKAEFFLRNQ SRDLTFNQID DLTLRAIFAE SKLQEIRDNA VKQNITIIRN RVNQLGVAEP LVQKQGADRI VVQLPGIQDT ARAKEILNAT ATLEFRMVDQ KNDIRDALNG RVPPGSQVIE DQQGIPQLLE KRIMLTGSHI IDANSGVDEY GLPNVNISLD SEGGNKMSRS TRGNIGKPMA TVFIEYKSTG ERNDDGKLVF EKHEQVISVA TIRAQLGSKF QITGLDSPKE ARDLALLLRA GALIAPIQIV EERTVGPSLG KENIELGMQA IIYGLAAVLV FMLIYYKAFG VVANIALITN LVMIVGIMSM IPGATLTLPG MAGIVLTVGM AVDANVLIFE RIREELREGR SPQQAIHHGY DSAFSTILDA NITTFIAGLI LFAVGTGPIK GFSITLMIGI ATSMFTAILV TRVIVNAVWG GKRVEKLAI
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