Gene MADE_01347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_01347 
SymbolsecD 
ID6776755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp1444251 
End bp1446050 
Gene Length1800 bp 
Protein Length599 aa 
Translation table11 
GC content47% 
IMG OID642754784 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002125655 
Protein GI196156166 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.151962 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTGCAA TGTGTGCACT TTACGCACTT CCTAACATTT ACGGCGAAGA TCATGCCGTA 
CAAATCTCAG CAGGTCGTGA TGCTGTGGTA ACTAACGCCA CGGTAGAGCA AGTAAAGGCC
GCGCTAAACG AAAAAAACAT CTCGCCGAAG CGTGTTGAGT TTGAGAACGA CCAAATTTTG
GTTCGCGTTT CTGATTCAGA TACACAGCTA GTAACCCGCG AAACTTTAGA AAAGACGCTT
GGTGACGACT ACTACGTGGC AATGAACCTT GCCCCAGACA CGCCGGAATG GCTAGAAGGG
TTAGGTGGCG CACCGATGAA ACTTGGTCTT GACCTTCGCG GTGGTGTGCA CTTCTTGATG
GAAGTGGACA TGACGGAAGT TATCACTAAG TCACTGGAAG ATGCTGAAAG CGGCTTTCGC
ACCTCTCTGC GTGAAGAGGG TATTCGTTAC CGTGGTGTTA AACAAGTAGA CGACCATATC
GACATTACCT TCCGCGATGA AGATACGTTA GATAAAGCGG AGTTCTTCCT GCGCAACCAA
AGTCGTGACC TAACGTTTAA CCAAATTGAT GACTTAACCC TTCGCGCTAT TTTCGCGGAG
AGTAAGCTTC AAGAAATTCG CGACAACGCG GTTAAGCAAA ACATCACTAT CATTCGTAAC
CGTGTTAACC AGCTTGGTGT TGCTGAGCCT CTTGTTCAAA AACAAGGCGC TGACCGTATT
GTTGTTCAGC TCCCCGGTAT TCAAGATACC GCTCGTGCAA AAGAAATTCT AAACGCGACG
GCGACCCTAG AATTCCGCAT GGTTGATCAG AAAAACGATA TTCGCGATGC ATTGAACGGC
CGTGTTCCTC CTGGTTCTCA GGTGATTGAA GATCAGCAAG GTATTCCACA GTTACTTGAA
AAGCGTATTA TGCTTACTGG TAGCCACATT ATTGATGCTA ATAGCGGTGT TGATGAATAT
GGTCTTCCAA ATGTAAATAT CTCGCTAGAC TCTGAAGGCG GTAACAAAAT GTCTCGCTCA
ACCCGCGGCA ACATTGGTAA GCCAATGGCA ACGGTGTTTA TCGAGTACAA ATCTACCGGA
GAGCGAAATG ACGACGGTAA ACTTGTGTTC GAAAAGCATG AGCAAGTTAT CTCAGTTGCC
ACCATTCGTG CGCAGCTTGG TAGTAAGTTC CAAATTACCG GTCTTGATTC TCCAAAAGAA
GCTCGTGATT TAGCGTTACT ACTTCGCGCG GGTGCACTTA TTGCGCCAAT TCAAATTGTT
GAAGAGCGCA CCGTAGGCCC AAGCTTGGGT AAAGAAAACA TCGAGCTAGG TATGCAGGCT
ATTATCTATG GCCTTGCGGC TGTGCTTGTT TTCATGTTGA TTTACTACAA AGCGTTTGGT
GTGGTAGCGA ACATCGCGCT TATCACTAAC CTGGTAATGA TTGTAGGCAT CATGTCGATG
ATCCCGGGCG CAACCTTAAC GCTTCCAGGT ATGGCGGGTA TTGTACTTAC CGTTGGTATG
GCGGTAGATG CTAACGTGCT AATCTTTGAG CGTATTCGTG AAGAGCTTCG CGAAGGGCGC
AGTCCGCAGC AAGCTATTCA CCACGGGTAC GACAGTGCAT TCTCAACCAT TTTGGATGCG
AATATCACTA CTTTCATTGC TGGTTTAATT CTGTTCGCAG TTGGTACCGG CCCAATTAAA
GGCTTCTCTA TTACGCTAAT GATTGGTATC GCAACTTCAA TGTTTACCGC TATTTTGGTT
ACTCGCGTTA TTGTTAACGC AGTATGGGGC GGCAAACGTG TAGAGAAATT AGCGATTTAA
 
Protein sequence
MVAMCALYAL PNIYGEDHAV QISAGRDAVV TNATVEQVKA ALNEKNISPK RVEFENDQIL 
VRVSDSDTQL VTRETLEKTL GDDYYVAMNL APDTPEWLEG LGGAPMKLGL DLRGGVHFLM
EVDMTEVITK SLEDAESGFR TSLREEGIRY RGVKQVDDHI DITFRDEDTL DKAEFFLRNQ
SRDLTFNQID DLTLRAIFAE SKLQEIRDNA VKQNITIIRN RVNQLGVAEP LVQKQGADRI
VVQLPGIQDT ARAKEILNAT ATLEFRMVDQ KNDIRDALNG RVPPGSQVIE DQQGIPQLLE
KRIMLTGSHI IDANSGVDEY GLPNVNISLD SEGGNKMSRS TRGNIGKPMA TVFIEYKSTG
ERNDDGKLVF EKHEQVISVA TIRAQLGSKF QITGLDSPKE ARDLALLLRA GALIAPIQIV
EERTVGPSLG KENIELGMQA IIYGLAAVLV FMLIYYKAFG VVANIALITN LVMIVGIMSM
IPGATLTLPG MAGIVLTVGM AVDANVLIFE RIREELREGR SPQQAIHHGY DSAFSTILDA
NITTFIAGLI LFAVGTGPIK GFSITLMIGI ATSMFTAILV TRVIVNAVWG GKRVEKLAI