| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01321 |
|---|
| Symbol | |
|---|
| ID | 6777377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1417564 |
|---|
| End bp | 1418580 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642754758 |
|---|
| Product | capsular polysaccharide biosynthesis protein I |
|---|
| Protein accession | YP_002125629 |
|---|
| Protein GI | 196156140 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCT TAGTCACCGG AGCCGCTGGT TTCATAGGAG CGGCTGTATC GCAATACCTT
ATCAATCGTG GTGACCAAGT TGTCGGAATT GACAACATTA ACGATTATTA CGATGTGAAT
TTAAAGCATG CTCGTCTAGA CGAGATTAAA TCATCTACTG CTGCTGATTT ATTTTCATTT
ATCGAGATGG GGGTAGAAGA GCGCGACAAA ATGGCTGCGC TTTTTGAAGA GCACAAATTT
GATAGAGTGG TGCATTTAGC TGCTCAAGCT GGTGTGCGTT ATTCACTTGA AAATCCTAAC
GCTTACGTCG ACTCAAATAT TGTTGGCTTT GTGAATATTC TAGAAGGGTG TCGCCATAAT
AACGTCGAGC ATTTGGTGTA CGCGTCATCT AGCTCAGTCT ACGGTGCGAA TGAAACTATG
CCGTTTTCAG AGCAGCACAA CGTAGATCAT CAAGTTAGCT TGTATGCGGC TTCTAAAAAA
GCTAACGAGC TAATGGCCCA TACTTATAGT CACCTGTATG ACTTGCCTAC AACGGGGCTG
CGCTTTTTCA CTGTTTACGG GCCTTGGGGC CGTCCAGACA TGGCGCTTTT CAAGTTCACT
AAGGCTATTT TGGAAGGTAA AACAATACAG GTTTACAACT ATGGTAACCA CCGTCGTGAC
TTCACTTATA TAGATGATAT CGTTGAAGGC GTAATTCGCT CATTGGATAA TGTGGCTAAA
CCTAACGAGA ATTGGGACGG CAGCAATCCA GATCCAAGTA CGAGTAAGGC GCCCTATAAG
GTATACAATA TTGGTGCGCA AACACCAGTG CACCTTTTGA AGTTTATTGA AACCCTTGAG
AGTGCATTGG GCATTGAGGC GAAGAAAGAA CTTTTTCCTA TGCAGCCAGG CGATGTGCCT
GACACCTATG CTGATGTGTC GTCGCTCGTT GAAGATACTG GGTACCAGCC ATCTACCGAT
GTTGAAACAG GCGTAAAAGC GTTTGTCGAC TGGTATCGCG ACTTTTATAA AGTGTAA
|
|---|
| Protein sequence | MKILVTGAAG FIGAAVSQYL INRGDQVVGI DNINDYYDVN LKHARLDEIK SSTAADLFSF
IEMGVEERDK MAALFEEHKF DRVVHLAAQA GVRYSLENPN AYVDSNIVGF VNILEGCRHN
NVEHLVYASS SSVYGANETM PFSEQHNVDH QVSLYAASKK ANELMAHTYS HLYDLPTTGL
RFFTVYGPWG RPDMALFKFT KAILEGKTIQ VYNYGNHRRD FTYIDDIVEG VIRSLDNVAK
PNENWDGSNP DPSTSKAPYK VYNIGAQTPV HLLKFIETLE SALGIEAKKE LFPMQPGDVP
DTYADVSSLV EDTGYQPSTD VETGVKAFVD WYRDFYKV
|
|---|
| |