| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01224 |
|---|
| Symbol | |
|---|
| ID | 6778149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1310918 |
|---|
| End bp | 1314958 |
|---|
| Gene Length | 4041 bp |
|---|
| Protein Length | 1346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642754661 |
|---|
| Product | extracellular ribonuclease/nuclease fusion protein |
|---|
| Protein accession | YP_002125532 |
|---|
| Protein GI | 196156043 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2374] Predicted extracellular nuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAATG AGGGTAACAC ACAAAAGTAC ACGCTGAGAA AGTCAGCAAA AGTGATTAAT
GCACTATTAG CCGGGGCATT ATCATTCGGC GTAATATCGC TAAACGCAGG TGCAGATACG
CTATGGCAAG AAGATTTCGA AGCCAGTGAG CTGCAAGGCA AGGGCGCCAC TGGCCCCATC
GAAATAGGAA CTAATGTCAC TATTGAAGAT GTCAGTCGCT GGTCAATTGA TGTTTCCACG
GGTGAATTAA CGGCAACGTC AGACTGGTTT CGCGTAGCAA ATGGCGCAAT GCAAGCGCGT
GATGTTGATG GCGAAGTGGT GTGGCAAAGT GAGTCTATAG ACATAACCGG TCAGGGTAAC
ATTACTATCG ACGCTTTGTT ATCTAAAAGC GGCACCATGG AAGAGGCTGA CTATATAGAC
GTTTTCTATT CCATCGACGG TGGGGCGTTT GAACTTATTG CACCTATTGC TGGTAGTGCC
CACACAGTAA AAGACGATTT TGAGAACGGC AACGTTTCGG CTGCTATTGG CAGCGGGAAC
AGCCTTGTTC TTAAAGTTGC TATGGCAAAC AACGCAGGAT CCGAATATCT TAACCTTGAA
AGCATTTCAG TTAGCTCGTC TGGGGCGACA GACGGCGGCG ATACACCTGA CGAAGGCGGT
GAACCTTCAG GCGAACTGCT TTTCTTAAGC GGCACCTGTT TTAACTGTCC AGATCTAGAA
GCGATTAATT TAGCGAGCGA CTTTGTTGCT TCAGACTATT ACGCCACGCT CGATACGGCC
ATTGCCAATG GTGAAAGTGC ACAAACATTA AAAGAAACAA CGCACACAAT CATTGAAAAT
GGCCATCGTA CGCTATCGTA TTCAGAGGTG TGGACCGCGT TAACTTACAC TGATGAAGAC
CCTTCAAATA CTGAAAACGT CATTTTGTTT TACAAGGGCA TATCGCAAGA TAAATTTACT
AACGGAAGCG GTAGTCAAAG TACTAACCAA GACAATTGGA ACCGCGAGCA TGTTTGGGCG
AAAAGTCATG GCTTCTCAAG CACAAGTTTA ACGGCTTATA GCGACATCCT GCACCTACGT
CCTACTGACA TTTCAGTTAA CAGCTCACGC GGGAATCTAG ATTTTGACTT CAGCGATAAC
GAACTTAATG AAGCGCCAGC AAACCGCGTA GACAGTGATT CGTTTGAACC ACGTGACGCG
GTAAAAGGTG ACGTTGCGCG CTCTATGCTT TACATGGATG TGCGATACGA TGGCAATACC
GCGGGTGATA CGGAAGAAGA CTTAGTCTTG CTGAATCGCT TAACCACTAC TGACGAAGCG
GCCTTCGGCA AGCTTTGTGT TTTGCTTCAG TGGCATGAAA GCGACCCAGT AGATGAATTC
GAACGTCGCC GTAATGAACG CGTTTATGAA TTCCAAGGTA ATCGAAACCC GTTTATTGAC
AAGCCGGAAC TGGCCTCGCT TATCTTCAAC GAAAGCTGCG ATGGCACAGG CGGAGACTCG
GGCGGTGACA CAGGTGGTGA TACCGGTGGT GATACCGGTG GTGACACAGG TGGTGATACC
GGTGGTGACA CAGGTGGCGA TACAGGAGGC GACACAGCAC CATCAACCAA TAGCGTTTAC
ATTTCAGAGT ATATTGAGGG TGGTAGCTTT AACAAAGCGA TAGAGCTTTT CAATAGTTCT
ACTCAGCCTG TAAGCCTATC TGGCTATGAG TTGGTACTAC TTTCAAACGG CGATACCGCC
GATGCAGACC GTAAAGTTTT AGCGCTAGAA GGCGAAATTC CTGCAGGTGG TGTGGCAACA
TTTGCTCATG CAGATGCCGA TGCCTTACTG ACAAGTGGTT CTACCCTTAG CAGCTTCGTA
ATAAATTTTA ACGGCGACGA TTACGTTGAG TTGGTATACA ACGGCCAAGT GGTAGATGCA
CTAGGTACTT ACGGCGTTAG GACTAATTGG GGTAAAGACG TCACGTTAGT GCGTAAGAGT
TCCGTGACAG GCGGAAACGC TAACCGAAAC CCTGCTTTTA CTACTGATGA GTGGGATAGC
TTTCCTAAGG ATACGCTAAG TAATTTTGGC TCCCATAACG GTTCAGTAAG TGAACCTACT
GACCCAACCG ACCCGACAGA CCCGACAGAC CCAACCTACC CAACCGACCC AACGGATCCC
ACTCCTGAAG TGGTACTCAT CAGCGCAATT CAAGGCGACG GCGAGGAGTC GGCACTTATT
GGCAGTGATG TCATTGTTGA AGCGGTCGTC ACAAAAGTGG TGCCTGATAT GAGCGGGTTT
TTCGTTCAGG AAGAAGCAGC TGATTCGGAT GACAATACAT CAACATCTGA GGGTGTGTTT
GTTTACGCAG GTTCATTTAG CCTACCTGTA GCGGGCGATG CGGTGCGTTT ACAAGGTACA
GTAGGTGAGC GCTTTGGTGT AACTCAAATC GCTTTATCTG CGGATGTAGA GGTTACGGGG
TCTGGTAGCA GCGTGCTTTA CACGTCAGTT GCTATGCCGT TTAGCCCGGG TACTGATTTA
GAAGCACTAG AGGGCATGCA TATTAGTTTT GAGCAAACGC TCAAAGTCTC TGATATCTAC
AATCTTGGTC GCTACGGTCA GTTCAACGTG TCGTCTCAGC GCTTAATGAT TCCTACTAAC
CAGTTTGTAG CAGGTTCACA AGAAGCGTTG GCGCTAGCTG AAGCCAATGC ACGAAACACC
TTATTGGTTG ATGACGGAAA AACATCACAG AATTTGGATG ATATTCCTTT CCCTGTTGGC
GGATTATCGC ATAACAACCC ACTGCGTTTG GGAGACAGTG TTGAGGCCTT AGAAGGTGTA
TTACATTATG CCTTTGGTGC TTACAACCTC ATCCCTGTTG GTGATATTCA AACCGTGCGC
ACTAATCCAC GAATTGCTGC ACCACAGCTA AATGCTATCG GTGATGTAAA AGTGGCTAGC
TTTAATGTGC TCAATTACTT CAATGGCCCT GAGTTCCCGA CCCCTCGCGG CGCAGATTCA
GTTGCCGAGT TCGAACGTCA GAAAGTGAAA ACCATTGCTG CTATTGTAGC GATGAATGCC
GATGTACTTG GCCTTGTTGA AATTGAAAAC GATGGCTATA GCAGTGAATC GGCGATTGCG
ACATTAGTTG ACAGCGTTAA CGCTGAACTA GGCAGCGATG AGTACAGCTA TGTTGCATTA
GAGTCTCAAC TAGGCGGAGA TGAAATAGCT GTAGGCATTA TCTATAAGCC AGCGGTAGTT
TCACTTCAGG GTAACCCTGT TACTTCATCT AACGCACCGT TTGACTATGG TAACCGTCAG
CCTTTACTAC AAAGCTTTAG TGTGAACAGC AATGGCGAAG ACTTTACCTT AGCGATAAAC
CACTTCAAGT CGAAAGGAAG CTGTGGCAGT GCTACGGGTA ACAATGCCGA TTTAGGTGAC
GGCCAAGGCT GCTGGAACGA ACTGCGTACT CAAGCAGCAC AAGGCATTAT TTCACTTGTT
GAGCAAAACA GCGATATTTT GTCTGACCGC GTTATCGTAA TGGGTGATTT AAATGCCTAT
GCGAAGGAAG AGCCTATCCT TGCGCTTGAA GAGGCTGGCT ACAGTAACTT AGTTAACTTC
TTTGATGGCG ATAGTGCTTA TTCGTATAGC TTCGGCGGCG AAATGGGATA TCTCGACCAC
GCTTTATCAA GTCCATCGTT AACTGAATAT GTGGTAGACG CAACGGTATG GCACATCAAT
GCCGATGAAC CTCGCGTGTT CGACTATAAC GTTGAATTCA AATCAGAAAC TCAGCTTTCT
AGCTATTATG GCGCGGATGC TTATCGCTCG TCAGATCATG ACCCGGTAGT GGTTGTGCTT
AACTTCCCAG AAGAAGTGAC AGTAGGAGAC TTTGATGGTG ATAACGATGT CGATTACAAC
GATATCATGG CCTTCTATCA ACTGTTTTTA CAAGGGCAAG CGACGGCTGA AAGCTACGAT
TTTAACGGCG ACGGCCAAAT CAGCTTCTTC GATATTCAAG CATTAATGGC GATGTGTACA
CGCGCTAACT GTGCAATTTA A
|
|---|
| Protein sequence | MINEGNTQKY TLRKSAKVIN ALLAGALSFG VISLNAGADT LWQEDFEASE LQGKGATGPI
EIGTNVTIED VSRWSIDVST GELTATSDWF RVANGAMQAR DVDGEVVWQS ESIDITGQGN
ITIDALLSKS GTMEEADYID VFYSIDGGAF ELIAPIAGSA HTVKDDFENG NVSAAIGSGN
SLVLKVAMAN NAGSEYLNLE SISVSSSGAT DGGDTPDEGG EPSGELLFLS GTCFNCPDLE
AINLASDFVA SDYYATLDTA IANGESAQTL KETTHTIIEN GHRTLSYSEV WTALTYTDED
PSNTENVILF YKGISQDKFT NGSGSQSTNQ DNWNREHVWA KSHGFSSTSL TAYSDILHLR
PTDISVNSSR GNLDFDFSDN ELNEAPANRV DSDSFEPRDA VKGDVARSML YMDVRYDGNT
AGDTEEDLVL LNRLTTTDEA AFGKLCVLLQ WHESDPVDEF ERRRNERVYE FQGNRNPFID
KPELASLIFN ESCDGTGGDS GGDTGGDTGG DTGGDTGGDT GGDTGGDTGG DTAPSTNSVY
ISEYIEGGSF NKAIELFNSS TQPVSLSGYE LVLLSNGDTA DADRKVLALE GEIPAGGVAT
FAHADADALL TSGSTLSSFV INFNGDDYVE LVYNGQVVDA LGTYGVRTNW GKDVTLVRKS
SVTGGNANRN PAFTTDEWDS FPKDTLSNFG SHNGSVSEPT DPTDPTDPTD PTYPTDPTDP
TPEVVLISAI QGDGEESALI GSDVIVEAVV TKVVPDMSGF FVQEEAADSD DNTSTSEGVF
VYAGSFSLPV AGDAVRLQGT VGERFGVTQI ALSADVEVTG SGSSVLYTSV AMPFSPGTDL
EALEGMHISF EQTLKVSDIY NLGRYGQFNV SSQRLMIPTN QFVAGSQEAL ALAEANARNT
LLVDDGKTSQ NLDDIPFPVG GLSHNNPLRL GDSVEALEGV LHYAFGAYNL IPVGDIQTVR
TNPRIAAPQL NAIGDVKVAS FNVLNYFNGP EFPTPRGADS VAEFERQKVK TIAAIVAMNA
DVLGLVEIEN DGYSSESAIA TLVDSVNAEL GSDEYSYVAL ESQLGGDEIA VGIIYKPAVV
SLQGNPVTSS NAPFDYGNRQ PLLQSFSVNS NGEDFTLAIN HFKSKGSCGS ATGNNADLGD
GQGCWNELRT QAAQGIISLV EQNSDILSDR VIVMGDLNAY AKEEPILALE EAGYSNLVNF
FDGDSAYSYS FGGEMGYLDH ALSSPSLTEY VVDATVWHIN ADEPRVFDYN VEFKSETQLS
SYYGADAYRS SDHDPVVVVL NFPEEVTVGD FDGDNDVDYN DIMAFYQLFL QGQATAESYD
FNGDGQISFF DIQALMAMCT RANCAI
|
|---|
| |