Gene MADE_01027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_01027 
Symbol 
ID6776325 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp1081202 
End bp1084822 
Gene Length3621 bp 
Protein Length1206 aa 
Translation table11 
GC content47% 
IMG OID642754459 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_002125335 
Protein GI196155846 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCTTGCGC TATATCCCTC TAACAAATTA GAACACTTAA GTTTTCTTCT TACTACGCTT 
TTACGTCAAC AGCCTTTAGA CGTATTTACC CCAGAAACGA TCTTGGTTGA AAGCCCAGGT
ATGCAACATT GGGTAAGCAT GCAGATGGCT AACAAACAAG GCGTAGCCAT GAACATCGAC
TTCCCACTGC CCGTGCGTTT TATGTGGAAT ACAGCACGTA CTGTATTGGG GGCTGACAAG
GTACCGAAAC AATCGCCTTA TCGCCGCGAA GTACTCACGT GGCGTATAGA TAATGTTCTT
CAAGATAATG CGCTAATGGA TAGCGATGCA TTCGAGCAGG TTAACAAATA CTGGCAAAGT
GCAGGTAGTG AACAAGAGCA GGGGCTGCAG CGGCTTCAGC TTGCTACGGC ACTGGCTGAC
GTATACGAAC AATACTTGCT GTATCGCCCT GACTGGTTGT TTAAATGGGA AAATAACGAG
CGAGCCGTAT TCGACGATAT GGAAGTGTGG CAAAGTGAAA TTTGGCGAAT TTTAGCGAAA
GACCAGCCTT TGCATCCCGC ACGCTTACAT CAAATGATGC TAGAAGCGCT AGAAGCGGGT
AACGTACCTG CTCATTTGCC CAAGCGCGTT ATTGTTTTTG CCATAAACAC CATGGCGCCC
CAACTCATTG CGTTTTTCGA TGCCCTTGCC CAGCACATCG ATATACATAT CTTTCACCTC
AACCCCAGTG TTAACTATTG GGGTGAAGCA AAAAGTAGTA GTGAGCAAGC CAAGCTGCTT
CGTTTAGAAG GACTTAAAAA GTGGATGGAA GAAGACCAAT CCAACCCACT GCTTGGCAAC
TTAGGAAAGC AGGGCCGAGA ACTGTTTAAC TTACTCACCG AGCTGGATAC GTTTGAAATA
AGTGCATTCG ACTCGCCAGA TTTCGAAAGT GCAGGTGAGG GAGAGGATGA ACACGGACAG
TGTCATTCCA GAGGCCTACT CGACTACATT CACAATGATA TCCTTCAGGC TGCTCACCCC
CAGCCACTGA TTCACCAATC AAAGAACAAA GACGACAGTG TCACCGTAAT GTGCACCCAT
TCTGCACTGC GCGAAGTTCA AGTGTTACAT GACCACTTGC TGCACTGGTT GTCTCAAGAC
AAAACCCGCA CACCCTCTGA CATATTGGTG ATGTGCCCGG CGATTGAGAA TTACGCGCCG
TTTGTTGATG CAGTATTTCA CCGTGTGGGT ACCAAATCTT TAGGCGCTAC TGGGCAGGTA
CGTCTTCCTT GTACTATTGC TGACAGAAGC CCCATGGATG CAGAGCCCCT TATTGCAGCA
TTCATGGCCT TGCTACAGTT ACCGGATAGC CGCTTTGGTG TATCGGATAT TTTGGATTAC
TTACAGCTCG ACTCGGTTCA AAAGCGCTTT TCCGTGTCTC AAGATGATAT AGAGCAAATG
GTCGTTTGGT TAAAGCAGGC ACACATTCAT TGGGGCCTTA ATAGCGCTCA TAAAACTGCG
GTGTCAGAAG GCGTAAATCT AGACGACACC TATAGCTGGT GGTGGGGCAT TCGCCGTTTA
CTTATGGGCA TGCTTGCGCC AGATAGCGAA ATGATAGTGA GTGATGTACT TACCATTCCC
GATGTGGAAG GGCAAAGCGC GTTAACGTTA GGTAAGCTCA TAGAAGTGGT GGCGTTACTG
GGGGAATTTG CTCAAGAGTT AACCCAACCC CGAACGCCAG AACAGTGGTC TAAAGCATTG
ATTGCGCTTC GTGACGCCTG CTTTATGCCT ACAAAAGATC AGCAGCAAAG CTGGGATCTC
ATCGCCAAAG TCGCCGCAGA CCTTGCCGCC CGGTGTGAAG AAGCTAACTA TGAGCACGAA
TTAACCTTGC GACAGGTTCG AGATCTTTTG CTCAATCGAT TTTCATCTCC AGATGCCGGA
AACCACTTTA TGACCGGTCA GGTTACGGTA TGTTCTATGC TTCCAATGCG AAGCATACCG
TTTAAAAAAG TGTGTATTTT AGGCCTGAAT GACAGTGAGT TTCCTCGTAA ATCAAGCCCG
TTAGGGCTCG ATTTAATGGC AAGTGATGGT CGCAGGGTTG GCGATCGCTC TAGACGATTG
GAAGACAGGT ACTTATTCCT AGAAGCTATT ATCTCAACCC GGGAAAGCCT GTATTTAAGC
TATCAAGGTA ACGATGTAAC GAATAACAGC GAACGACAGC CCAGTCTCGT TTTGGCTGAG
TTCATGGATA TGCTTGAAAA TAACTATGCA TTGTCACTAG AGAAATACGC GGTTCATGCG
CCGTTACATC CCTTCAGTGA ACCGGTTTTT GCTGGGGCGT TGCCCAGTTA TGAAACGGGG
TGGCTTCGCC TAGCCGATGC GCTTCAGCAC AACAAATTTG GTGCTAACGC GGCTGATACG
AATGAAAACG CTGATGTTGT TGATACCTCC CTCGATACGG CGACAGCTGA TATTAGCCAG
TCGCCCCGCG CACTTGCAAC ACAAGCGCTA CGTTTGTCGA ATATGCAAAT CGCCAGAGCA
TTTAAAGATC CGCTTGAGCA TTTTTCCATA CAAAGGCTTG GCGTGAATTT ATCGCAATCA
TTTACCCTGC TTGAGAACAG CGAACCTTTC GAAACCAATG CATTGCTGCG TTATCAGGTG
CTCGACGCTA TATTTTCCTC GCCTGAGCGC AATAATTCGT CAGAACTTGA TGCCAGTGAA
CTTACATACA GCGAGCAAGT AATTACATTT GCTTCGCTTA GAGGGGATAT TCCCAATAAC
CCAGTGGCAA TGGATGAAGT TGAAATGTGG AAAGAGGGAG CGCTAGCGCT AAGTCAAGCT
ATGGGCCCTC ACGATGCCGA GCCCAAAAAG GCACAGTTTC AAGGTAAGTA TATTACCTTC
ACGACTTCGG CCCTAGAAGG CAGCGACGCA TTAGTCGAGC TTTGCGCCGG GAAAGTTGAC
GCTCATCGGG CGCTAGGCTT TTTCATCTCT CAATTGATAT TTTCAAGTAG CGATGAAACA
ACTAGTTACA CCCATTACCC ATTAGAAATT TACGCCTGCT CTTGGGAAAA AGGCGAAACT
ATTCTGAAAA AACAGAAATT TGCTGCAGTT GAGCGCGAGA CCGCCGTTCA GTTACTCCTG
TTTATAGAGC AGCTTTACAT GGCTATTTAC ACCGCGCCAA CCCCCGTGCA TTTAAGTTTG
TTTGGTAGCA TTATACCTGG TAAGAGAAAT TCAGAATGTA AACCAGTTGT CGACAGTATA
AAACCTGAAA TGTTTGGACA CCTACTTAGG GCGCTATTGA GTGCTGACAA TTCCTGTGAA
ACCGACAAAG CGGTTATTTA TCAAGTAAAG CAGGCTATTG ATGAAGTCTG CCCAATTGCA
GATAACGACA CTGTCGATGA AGCAAGCGAA AAAGCACAGC AAATCATAAC TCAAGCGGCT
GGGCTTTTCG ACACGGTAGA ATTACAACGG TCGCTAACCG ATTGGCAGCA AAGTAGCGGG
CAGTATAGCG CTGACATGGC TAATAACCCT TATCTTAACT GGCTATTTCC TCAAGGTATC
AATTGGAGTG ATGTGCCGCA TTTAAGTGCC TTTTTACTAC TCGCCATGGT AAACAACGCG
TCTCAAGAGG AGAAGTTATG A
 
Protein sequence
MLALYPSNKL EHLSFLLTTL LRQQPLDVFT PETILVESPG MQHWVSMQMA NKQGVAMNID 
FPLPVRFMWN TARTVLGADK VPKQSPYRRE VLTWRIDNVL QDNALMDSDA FEQVNKYWQS
AGSEQEQGLQ RLQLATALAD VYEQYLLYRP DWLFKWENNE RAVFDDMEVW QSEIWRILAK
DQPLHPARLH QMMLEALEAG NVPAHLPKRV IVFAINTMAP QLIAFFDALA QHIDIHIFHL
NPSVNYWGEA KSSSEQAKLL RLEGLKKWME EDQSNPLLGN LGKQGRELFN LLTELDTFEI
SAFDSPDFES AGEGEDEHGQ CHSRGLLDYI HNDILQAAHP QPLIHQSKNK DDSVTVMCTH
SALREVQVLH DHLLHWLSQD KTRTPSDILV MCPAIENYAP FVDAVFHRVG TKSLGATGQV
RLPCTIADRS PMDAEPLIAA FMALLQLPDS RFGVSDILDY LQLDSVQKRF SVSQDDIEQM
VVWLKQAHIH WGLNSAHKTA VSEGVNLDDT YSWWWGIRRL LMGMLAPDSE MIVSDVLTIP
DVEGQSALTL GKLIEVVALL GEFAQELTQP RTPEQWSKAL IALRDACFMP TKDQQQSWDL
IAKVAADLAA RCEEANYEHE LTLRQVRDLL LNRFSSPDAG NHFMTGQVTV CSMLPMRSIP
FKKVCILGLN DSEFPRKSSP LGLDLMASDG RRVGDRSRRL EDRYLFLEAI ISTRESLYLS
YQGNDVTNNS ERQPSLVLAE FMDMLENNYA LSLEKYAVHA PLHPFSEPVF AGALPSYETG
WLRLADALQH NKFGANAADT NENADVVDTS LDTATADISQ SPRALATQAL RLSNMQIARA
FKDPLEHFSI QRLGVNLSQS FTLLENSEPF ETNALLRYQV LDAIFSSPER NNSSELDASE
LTYSEQVITF ASLRGDIPNN PVAMDEVEMW KEGALALSQA MGPHDAEPKK AQFQGKYITF
TTSALEGSDA LVELCAGKVD AHRALGFFIS QLIFSSSDET TSYTHYPLEI YACSWEKGET
ILKKQKFAAV ERETAVQLLL FIEQLYMAIY TAPTPVHLSL FGSIIPGKRN SECKPVVDSI
KPEMFGHLLR ALLSADNSCE TDKAVIYQVK QAIDEVCPIA DNDTVDEASE KAQQIITQAA
GLFDTVELQR SLTDWQQSSG QYSADMANNP YLNWLFPQGI NWSDVPHLSA FLLLAMVNNA
SQEEKL