| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01021 |
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| Symbol | |
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| ID | 6776342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 1073617 |
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| End bp | 1077795 |
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| Gene Length | 4179 bp |
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| Protein Length | 1392 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642754453 |
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| Product | sensory box/GGDEF/EAL domain protein |
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| Protein accession | YP_002125329 |
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| Protein GI | 196155840 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACGTT TTGCTTACTT ATTTTTGCTG ATGGCAATCA CCGCGACGCA AGCGGTGGCG
GCGCCTCGGC TGTCTAACCC TGTATTCCAA TCACTGTCGA CAAAGAACGG ACTTCCCCAG
GATATCGTCA ACGATATTGT CATCAATAGC GACGGATTTG TTTGGATAGC GACAGACGGT
GGGTTGGTTC GTTGGGATGG CATTAGAACG AAGCGTGTTG CTGGGCCGGA CAACCTACTT
TTCGACGCTT CAATCTACCG TTTAGCACTA CAGGGTGAAG AGGCGCTTTG GTTTAGTGTT
TACGGCCGAG GTGTGTATTA CCTCGATTTA GAATCACAAG AAGTCGTACA AATCGAACCT
ACTGACTTTC GCGATTTAGA AGGTTTTGTG CAGCACGGTG AAACCTTCCA TTGGCAGAGC
GATACGCAGT TAATTATTGC GCTGAGCGAA GAAGTACAGC GGTTCAATAC ACAGACAGAC
ACCCTTGAAA CCTTAGCTAA ATTACCCGAA ACGTTGCTCG ACAATAAGCA AGCCATTCGG
GCAGCGATAA CGGTTGAAGA TATCTTAGTG GTAGCAACCA CTGACGGCGT CTACACCAAA
AATGTTAACG ACATCGGGCA GCCGCTTAAA GAGTTAGACT ATCTTGGCGA TATTCCCGCC
AACTTGGATA ACTTAAATGC CAAGTTTTTG TTGGAAGACG ATAGCGGTAG AGTGTGGATT
TCCACTGTTT TGGGTGTCTT TGTAGCGAAT AAACAGGATT TCCTTCAGCA GGTACGTGGC
GAAAAAGAAC ATGTATTTAC GCAAGTAGTC GCAGATAGAA ACGTTTGGAC GCTAGTACAG
CATAAAGATG ATGCTTTTTG GATGGGCACT AACAAGGGGC TTTATCAATT AACCTGGTCA
GCAAATGATG GCTGGCAATA CGAACATATT CTTGAGCCTA ATAACGGCTT AACAGAAATA
TCAAACAAAA AGATTGCGGC AATTGCCAAA GACGAATCTG ATAACTTGTG GCTAAGTTCG
GTCTACGCAG GCGCGTTGTA TTTCGGCACT AAAAGCGCAA ATATCTTTGC GATACAAAAC
GAGCGCTCTG TCGGTAACGA CGTTCTTACT AGCCATGTTA TATGGACGTT CGCAGAGACA
GAGCCAAATA AACTTTGGCT AGGCACAGAA AACGGGCTAA ATCATTACGA CTTTTTGGCC
AAAAGCGCTG AAAAATACCT GTATTCAAAC AGTGAATATG CGATAGCAGG CGATGGCGCA
GTCGATGGTA TTATACCTGG CCCGGACGGA ACAATATTTC TTGAGACCTA TGATGGTATA
CGTATTTTTA ACCCAAATAG CGGTGAAGCA AAACGGCCAG AGATAGCAAA CGGTGGTGAT
AGCAGCGTTT TCGATGCTTA TGGTCCGGGC GCGACGCTCT CTAGCAACGG CCAACTGTAT
TTTATTGGCA ATGAAGGTTA TTGGAAATAT GACATCGCCG AAAAATCAAT TTCGTCGTTA
CAGCTCGACC CTCGTGTTTT CGATATTAAT TTCTCCTACG GGTTTTTAGG CGAGTCTGAG
TATCACCAAA AAAGGTTGTT TTTCGCAACA GAGGGTGGGT TGTGGTTAAT TAATCCAGAG
ACGAGCCAGC ACGAAATCGT ATACCGTTTC TCTGAGGTTC ATCGAGGAAG GGACCGCTCT
ATTGGTTCTT GGGTAATCGA CGATTTAGGT GTGTTGTGGC TTGCTTATAG CGGCGTGGGG
TTAATTGGCG TAGACGCTGA TACCTTTGAA CCCCTTTACA ACTTAAATGA CAGCAACATA
TTACTTTCAA ACATTGTTTA TGGGCTGCAA AAAGATGAGT CTGGCAATAT TTGGTTCAGC
TCGCATAAGG GGCTACATAA ATACGACCCA TCAACAGGCC AAATTAAAAA CTTTATTTAT
GGCCGCGAAC TTAGCGTGTC CGAGTTTAAT CAAGGTGCTT CAATTAAGTT GAAAGACGGG
CGACTCGCCT ACGGCTCTAC AAGCGGGGCT GTGGTTTTTT CTCCGTCACA ATTAGAAAGT
TTAGAGCCTG AAGGGAGTTT ACTTGGTAAG CAAACCGCGA TTACTGAAGT GGCGGTAGAC
AATCGAGTAT TGAATCAACC CTTAAGGAAC TTAAATGGGC ACCACTTCGA CTTAAACTAC
GAAGATTATG GTTTAACTAT CCACTTTTCT TCGTTGACTA TGTCGGGCGT CGGGAAAGTT
AAATACTATT ACAAGTTATT AAATGGCGAC AAAGTGGCGA CCGAAGGGGT TACGGAAGAC
GCGAAAATTA CGTTTACCAA CATATCGCCC GGCGATTACG TCTTCTCTGT GGTACCCACC
CCGGGCAGCT TCGATTTTAA CGTGTTACCG GCCGAGATAA CTCTTTCTAT GCCCTATGCG
CCGCTGCGCT CACCGTTGGC TTACACTATT TATGCAACGC TTGTTATTGG CTTATTCGTC
GCTTATTTAC TCTCCAGACA GCGTCAGTTG TTCAAATTAC AAAAGGCGAA ACAACAGGTT
ACGCTATTTA GCGATGCCTT CAGACAAACC CGCGATTGGG TATTAATTTT CGATAAAGAA
AAGCGCTTAG TCGCAGCTAA CCCTGCTTTC GAACAAGTAT TTGGTTTTAA CAATAAAGAG
CCCTTACCCA AGCAACTCGC TAAGTTGTAT ATGCGCTATC CGAACTTAAA TCGCCAGCTG
TCTGGAAAAC TTCCTGAGAT GCAAGGCGGT GACTTTTGGA AAGACGAGGC GGTTATCGAT
GGCGCTGACG GTAAACGTTA CGATGTACTA ATTGATATCA CAGCAGTAAG CGGCGAAAGC
AATGCAGCCG ACCATTACCT AATTGTTATC TCAGATATCA CTGAACAAAA AAATGCTGAA
CGTAAATTAC TGAAAATAGC CACCTACGAC AGCTTAACCG GGTTGGTTAA CCGTACTTTG
TTACTCGATA GGCTAGAGCA TGCTATTGGG CTTGCTCGTC ACAATAAGCA TCGCGTAGCC
GTGATGTTTG TAGACCTAGA CAGGTTTAAA GGCATTAACG ACTCGCTAGG TCATGACTAC
GGCGATAAGC TATTGCGCAT CGTTGCCAAT CGAATGAGAA ATTTGGTGGC CGAGTCGGGT
ACGGTTGCGC GGTTAGGTGG AGATGAATTT GTCATTGTTA TTGAAGAAGT GCTAAATGAC
GACGATTTAA GCTCTTTTGT AGGGCAAATA ATTGAATCGG TTGAAACACC CATCTCGTTA
GCAGAAGAAG TACTTCGTGT TTCTTGTAGC ATTGGCGTGG CATTTTATCC AGAGGATGCC
TCTGAACCTG CTGAATTGAT AAAGCAGGCC GACGTTGCCA TGTATAGCGC GAAAAAAGAT
GCCCTTAGCG GCTTTACTTA CTTTACCCGT GATATGAACG AACGGGCGAA AACGCGTCTG
TTGCTAGAGA ATAAGGTAAA ACGTGCCTAC TCAGATGATT GCTTCTTTAA TCACTACCAG
CCAATCATTG ATGCCCGTAC CAACACGACA ATAGGCGTAG AGCTACTATT ACGTGGAAAG
CTAAACGATG AACCGCTCTA CCCAGATCAG TTTATTCCTG TTCTCGAAGA GCTTAAGTAC
ATTATAGAAG TGACGCGGCA AGCGATGCGC AGAGCAGCCG AAGACTTATC ACAGTGGTAC
GAGCAAGGGT TTAACGGATA CGTCTCCATT AACCTATCTG CATTACACTT TAAAACCGAG
TTTGATCTTG GTGGTGTGCT GAGCGTGCTT GAAGAGTTTA AGCTTCCTAA ATCGGCCTTC
CGATTTGAAA TTACGGAAGG AGTACTTATG GACGACAGTG ATAATGCGTT AAGGCAGATA
AAGCGCTTTG TTAAGGAAGG GTTTATCCTT GCGTTAGATG ACTTTGGAAC GGGCTATTCA
TCGTTAAGCT ATTTGCAGCG CTATCCGCTA TCCGTACTCA AAATAGACAA AAGTTTTGTT
AACGAAATGG CGGCGGGAAA TGCTAATGAA GCCTTAGTAA CCACAACAAT CACGCTAGCT
AGTAATCTAA ATATGAGTTG CGTAGCGGAA GGCGTAGAGA CACAAGAGCA GGTAAAAGAG
TTAATCGATA AAGCCTGTTT TTTCCACCAA GGTTATTTTT ATGCCAAACC CTGCACGGCG
AGTGAGGTGG CTCCGCTGCT GTTTAAATCT TGGTCATAA
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| Protein sequence | MRRFAYLFLL MAITATQAVA APRLSNPVFQ SLSTKNGLPQ DIVNDIVINS DGFVWIATDG
GLVRWDGIRT KRVAGPDNLL FDASIYRLAL QGEEALWFSV YGRGVYYLDL ESQEVVQIEP
TDFRDLEGFV QHGETFHWQS DTQLIIALSE EVQRFNTQTD TLETLAKLPE TLLDNKQAIR
AAITVEDILV VATTDGVYTK NVNDIGQPLK ELDYLGDIPA NLDNLNAKFL LEDDSGRVWI
STVLGVFVAN KQDFLQQVRG EKEHVFTQVV ADRNVWTLVQ HKDDAFWMGT NKGLYQLTWS
ANDGWQYEHI LEPNNGLTEI SNKKIAAIAK DESDNLWLSS VYAGALYFGT KSANIFAIQN
ERSVGNDVLT SHVIWTFAET EPNKLWLGTE NGLNHYDFLA KSAEKYLYSN SEYAIAGDGA
VDGIIPGPDG TIFLETYDGI RIFNPNSGEA KRPEIANGGD SSVFDAYGPG ATLSSNGQLY
FIGNEGYWKY DIAEKSISSL QLDPRVFDIN FSYGFLGESE YHQKRLFFAT EGGLWLINPE
TSQHEIVYRF SEVHRGRDRS IGSWVIDDLG VLWLAYSGVG LIGVDADTFE PLYNLNDSNI
LLSNIVYGLQ KDESGNIWFS SHKGLHKYDP STGQIKNFIY GRELSVSEFN QGASIKLKDG
RLAYGSTSGA VVFSPSQLES LEPEGSLLGK QTAITEVAVD NRVLNQPLRN LNGHHFDLNY
EDYGLTIHFS SLTMSGVGKV KYYYKLLNGD KVATEGVTED AKITFTNISP GDYVFSVVPT
PGSFDFNVLP AEITLSMPYA PLRSPLAYTI YATLVIGLFV AYLLSRQRQL FKLQKAKQQV
TLFSDAFRQT RDWVLIFDKE KRLVAANPAF EQVFGFNNKE PLPKQLAKLY MRYPNLNRQL
SGKLPEMQGG DFWKDEAVID GADGKRYDVL IDITAVSGES NAADHYLIVI SDITEQKNAE
RKLLKIATYD SLTGLVNRTL LLDRLEHAIG LARHNKHRVA VMFVDLDRFK GINDSLGHDY
GDKLLRIVAN RMRNLVAESG TVARLGGDEF VIVIEEVLND DDLSSFVGQI IESVETPISL
AEEVLRVSCS IGVAFYPEDA SEPAELIKQA DVAMYSAKKD ALSGFTYFTR DMNERAKTRL
LLENKVKRAY SDDCFFNHYQ PIIDARTNTT IGVELLLRGK LNDEPLYPDQ FIPVLEELKY
IIEVTRQAMR RAAEDLSQWY EQGFNGYVSI NLSALHFKTE FDLGGVLSVL EEFKLPKSAF
RFEITEGVLM DDSDNALRQI KRFVKEGFIL ALDDFGTGYS SLSYLQRYPL SVLKIDKSFV
NEMAAGNANE ALVTTTITLA SNLNMSCVAE GVETQEQVKE LIDKACFFHQ GYFYAKPCTA
SEVAPLLFKS WS
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